Yearly Archives: 2014

Mann Vs. National Review: National Review Floundering

The National Review is a political magazine, and Mark Steyn, I think, writes for them (I really don’t keep track). A while back Steyn and/or the National Review made some seemingly very defamatory statements about Michael Mann, the climate scientist. Career-damaging really icky accusations of fraud and such. They were bogus accusations, but they were also not just trollish yammering of the type we see all the time from the science denialist gaggle. So, Mann sued them.

NationalReviewHyperboleMemeI prefer the Law and Order version of law. Something happens on Monday, on Tuesday everything is confusing, on Wednesday there is a car chase or something, on Thursday everyone is in court and on Friday the whole maneno is done with and everyone is back to eating donuts. Real legal stuff drags on forever. If you want to catch up, here are a few blog posts and other items that might help. (That was a search using the Climate Science Search Engine, which is on the right side bar of my blog!)

Anyway, there is a new development. National Review has filed a long and boring legal document that appears to be some kind of whinging about how the case against them should go away. Eli Rabbit has made two comments about it that I agree with. First, he notes that the document states that the prior yammering by National Review is not officially “malice” because they really believe the things they say. But, in the same document, they claim that “Read in context, Steyn’s commentary was protected rhetorical hyperbole, not a literal accusation of fraud or data falsification.” See meme.

The second point also stuck out as a sore thumb when I looked at it, and it is so obvious that I assumed I was reading the legal document incorrectly. But Eli confirms. From the legal document:

…critics have argued that the hockey stick is misleading because it splices together two different types of data without highlighting the change: For roughly the first nine centuries after the year 1000 A.D., the graph shows temperature levels that have been inferred solely from tree-ring samples and other “proxy” data. But from about 1900 onward, the graph relies on readings from modern instruments such as thermometers.

I’m pretty sure the technical legal term for this is taurus craps puris*. The hockey stick graph in its original form and most early incarnations has color coding or other appropriate line style differences to distinguish between the records. Some people have taken both the hockey stick graph and other similar graphics and merged the data into a single squiggle for presentation purposes, an acceptable if not always wise method. The National Review legal document also makes mention of shifting between proxies and instrumental data. They suggest that a broken instrumental record should have been used instead of simple temperature measurements with thermometers and stuff. This harks back to the time the climate science denialists stole a bunch of scientists’ email and made stuff up about it (a complicated story but one you can read about in detail in Mann’s book).

This filing by the National Review is a lame defense against a very well argued and appropriate law suit. I’m sure this won’t last until Wednesday in court. (Law and Order time.) Not only are their claims wrong, but they have been known to be long for a very long time.


*Translates roughly as Complete and Utter Bullshit.

Ebola Outbreak Continues, Probably Worsens, Perhaps Spreads

The WHO came out with a new report today with the latest figures on Ebola. These numbers take us to the end of July. There are two bits of bad news.

First, the number of new cases is high, as high as any prior report (but keep in mind that these reports cover uneven time periods). There are 163 new cases and 61 new deaths, bringing the total number of confirmed cases and deaths to 1009 and 574, with the total number of confirmed, probable, and suspected to 1,603 cases and 887 deaths.

Second, Nigeria is now in the mix. There was previously only one case in Nigeria, a Liberian man who contracted Ebola in Liberia and died in Nigeria. But now there are three probable new cases in Nigeria and one probable Death (none confirmed). According to WHO, of the Nigerian cases, “…one is a health-care worker and one is a Nigerian who travelled to Guinea — and a suspected case in a nurse.” I’m not sure if four cases (if confirmed) is an outbreak yet. If all the cases have quirky explanations having to do with other countries, than this not be anything new. But this could also be the beginning of the spread of the disease into Nigeria.

Here’s a graphic of the cumulative number of caeses by country (not counting Nigeria) and the total so far. These are all cases (confirmed, probable, suspected). You will notice that Sierra Leone is contributing the largest number of cases, but Liberia is contributing the strongest uptick in what seems to be an increase in rate of new cases (more on that below).

Ebola2014_Aug4_update_cases_by_country

This graphic shows the number of cases over time and the number of deaths over time (totals). Note that the gap between the two is widening, suggesting a lowering of the mortality rate.

Ebola_2014_total_cases_and_deaths_Aug4_update

To try to get a better idea of mortality rate over time, here’s a graph of the an estimate mortality rate based on the total number of cases and the total number of deaths for each of the WHO reports (which come out every few days) over time. There is no sense in calculating a simple correlation coefficient or R-squared value for these data because each data point is based on the adjoining data point plus or minus (they are not independent) but one suspects a proper time series analysis would suggest a decrease.

Ebola_2014_mortality_rate_over_time_per_report_August_4_update

Keep in mind that as the number of cases or deaths shifts along the confirmed-probable-suspected axis, the morality rate can change quite a bit. One might expect that the least certain category would have the lowest mortality rate because one is more likely to incorrectly assign a patient to having the illness than one is to attribute a death to the disease. Here’s the behavior of mortality rate across the different categories of available data. Note that the rate for “new” is probably going to be biased downwards if the rate of new cases is going up (because the number of people who have not died yet, but will, is greater than if the rate is going down); that 37% figure, therefore, is nothing to get excited about. Also keep in mind that “Total” is a combination of the other three categories. Given the vagueness of some of the data, one could say that a good estimate of mortality is 55%, but a large number of cases have been added in the last several days, so it might be better to say that the mortality rate in this outbreak is at least 55%.

Ebola_2014_Mortalit_Rate_Across_Categories_Aug_4_update

It seems that the number of new cases is going up but this is hard to count. The WHO reports cover different time periods, and I’ll wager that even within that constraint the data are a bit funky given the on the ground situation. Over the large scale of time it is clear that the number of new cases is rising. This graph shows the number of new cases per month, but keep in mind that the dates of the various reports do not match the ends of the months cleanly so there is room for error her. These are all cases.

Ebola_2014_New_Cases_Per_Month_Aug_4_Update

Since the rate of infection can go up or down over a matter of days, or a least, more rapidly than would be reflected in a month by month accounting, here’s the same data by half-month:

Ebola_2014_New_Cases_Per_Half_Month_Aug_4Update

And, because that does not capture important detail here’s the data again by WHO report, keeping in mind that the length of time covered by each report varies.
Ebola_2014_Rate_New_Cases_Per_Report_Aug_4_update

Actual epidemiologists use much more sophisticated methods for analyzing this sort of data, but this should give you the idea that while the rate of new cases varies a lot from report to report, there is a general upward trend in the number of new cases.

This Ebola outbreak is not going away soon, it seems.

Other posts on Ebola:

<li><a href="http://scienceblogs.com/gregladen/2014/08/04/there-is-a-cure-for-ebola-we-have-it-we-just-dont-let-anyone-use-it/">There is a cure for Ebola, we have it, we just don’t let anyone use it.</a>

<li><a href="http://scienceblogs.com/gregladen/2014/08/04/ebola-outbreak-continues-probably-worsens-perhaps-spreads/">Ebola Outbreak Continues, Probably Worsens, Perhaps Spreads</a></li>
  • Ebola Perspective: Risks of spread to the US and elsewhere
  • <li><a href="http://scienceblogs.com/gregladen/2014/07/27/ebola-outbreak-in-west-africa-some-basic-information/">Ebola Outbreak in West Africa: Some basic information (Updated)</a></li>
    

    There is a cure for Ebola, we have it, we just don't let anyone use it.

    LATEST UPDATE HERE … new numbers just in from WHO, and they are bad.

    I had suspected this might be the case. Disease like Ebola are potentially easily cured using serum. Here’s the idea. Someone gets the disease and survives, and their body now produces products that give them an immunity. So, you take a bunch of their blood, clean it up as best you can, and inject the serum (the cleaned up blood, to oversimplify) with these immune products, in to a person with the disease. That stops the disease, at least some of the time. The early history of the discovery of many nasty viruses involves several stories like this, where a researcher or physician is infected, seemingly likely to die, and is given a serum and lives.

    The serum treatment is potentially very dangerous because it can include who knows what from the other person’s blood. But it is quite reasonable to suggest that we can make a product that is based on serum that is clean and effective. In this case, specific products were obtained from infected mice.

    And, apparently, there is such a thing, it is a secret, and it is reserved only for select individuals (because there probably isn’t much). Oh, and it is totally experimental and until now, never before tried on humans. From CNN:

    Three top secret, experimental vials stored at subzero temperatures were flown into Liberia last week in a last-ditch effort to save two American missionary workers who had contracted Ebola, according to a source familiar with details of the treatment.

    A representative from the National Institutes of Health contacted Samaritan’s Purse in Liberia and offered the experimental treatment, known as ZMapp, for the two patients, according to the source.

    According to company documents, four monkeys infected with Ebola survived after being given the therapy within 24 hours after infection. Two of four additional monkeys that started therapy within 48 hours after infection also survived. One monkey that was not treated died within five days of exposure to the virus.

    …In the monkeys, the experimental serum had been given within 48 hours of infection. Brantly didn’t receive it until he’d been sick for nine days.

    The medicine is a three-mouse monoclonal antibody, meaning that mice were exposed to fragments of the Ebola virus and then the antibodies generated within the mice’s blood were harvested to create the medicine. It works by preventing the virus from entering and infecting new cells.

    Brantly asked that Writebol be given the first dose because he was younger and he thought he had a better chance of fighting it, and she agreed. However, as the first vial was still thawing, Brantley’s condition took a sudden turn for the worse.

    Brantly began to deteriorate and developed labored breathing. He told his doctors, “I am going to die,” according to a source with firsthand knowledge of the situation.

    Knowing his dose was still frozen, Brantly asked if he could have Writebol’s now-thawed medication. It was brought to his room and administered through an IV. Within an hour of receiving the medication, Brantly’s condition was nearly reversed. His breathing improved; the rash over his trunk faded away. …

    Writebol also received a vial of the medication. Her response was not as remarkable, according to sources familiar with the treatment. However, doctors on Sunday administered Writebol a second dose of the medication, which resulted in significant improvement.

    This is an untested drug that is not available for general use. This has led to some argument of whether or not it can be called a “treatment” or a “cure” because it has not yet gone though the process of development, testing, and deployment. One could call it a “potential cure.” The key point, is, that it could be developed and implemented, and since the science of making an antibody basted treatment is well established, it is hard to understand why this has not happened. yet. I suggest that all it would take is deciding to spend the money and effort on developing it, rather than simply ignoring Ebola because it is not Malaria.

    If I was President Obama, I’d simply order the military to take this to the next step. The US Army has done as much research on Ebola as any other agency. It would be a simple matter to move a few budget items around and allow USAMRIID organize, using its own people and consultants, to move forward (because you know the present Congress is never going to authorize spending money on helping sick people in Africa, even though this is also very much about the United States.

    It is the right thing to do.

    How to talk to your uncle who thinks global warming is a hoax?

    So, you accept the science of climate change and global warming as legit. But you often encounter people, at family gatherings, on your Facebook page, on Twitter, at social events, etc. who don’t. Do you keep your mouth shut when someone says something clearly wrong that brings the science into question illegitimately? If you do, and others are listening, then one voice, a denialist voice, is influencing people. Probably better to say something.

    The problems is that the denialist schtick involves having a lot of different arguments, with absolutely no regard as to legimacy, against the science. You’ve heard of the Gish Gallop. You make an argument that seems to invalidate your opponent’s position, and it does not matter how well that argument is demolished, no problem, you just make another argument. This is sometimes what happens when you find yourself in these conversations. “But what about ….” is probably the most common retort to a counterargument to a denialist claim.

    I’m frequently asked what resources people can use to learn about the arguments, both the denialist arguments themselves and how to counter them. If I provide information on one resource, it is always skepticalscience.com. That web site is very nicely organized, it includes all of the denialist arguments (if you know of a denialist argument skepticalscience.com does not cover, let them know, or if you like, let me know and I’ll pass it on). The primers that address the arguments are often provided at multiple levels, so you can get the non-technical tl;dr, or you can go into the details.

    But, not every body relates to web sites. Sometimes you like to take a book to bed with you for the evening, or to the beach, or to some other place where you like to read, and just learn stuff. Or, while you will certainly find skepticalscience.com or other web sites (including my blog, I hope) useful, you may want to explore a few other perspectives, or other ways of saying things.

    Well, now there’s a book for that. “How to Change Minds about Our Changing Climate” is slightly misnamed. This book, by scientists Seth Darling and Douglas Sisterson, does not really go into the science of mind changing. But it does provide a litany of denialist claims and the scientific answer to them, in a way that you will find useful. You will not only learn the arguments but you will gain confidence in making the arguments at that family dinner or school board meeting or cocktail party.

    Seth Darling is a scientist at the Center for Nanoscale Materials, Argonne National Laboratory, and a fellow at the Institute for Molecular Engineering at the University of Chicago. Doug Sisterson is a senior manager at Argonne National Laboratory, US Department of Energy Atmospheric Radiation Measurement Climate Research Facility. They know the science and have done a very nice job putting the argument on paper (or eBook). From the publisher:

    One by one, the authors debunk all the most pernicious myths surrounding climate change and offer talking points that readers can use to do the same, in chapters such as “There is no consensus” and “There’s no link between warming and extreme weather.” In fact, there is consensus, and the time to take climate change seriously is well past. As Darling and Sisterson cogently explain, “We are poised to compress an amount of global warming that historically has occurred over the course of thousands of years into a single century”—and the menacing effects we’ve already seen only hint at what’s to come…

    You can get the book here.

    Also, do me a favor. If you get the book on Amazon and read it, please go to Amazon and leave an honest review. Anti science denialists like to swarm books on amazon with bogus awful reviews, and you can help counter that.

    ADDED: An important criticism of this book, that I agree with, is the authors’ use of the actual myths to be debunked as titles. This is not good communication strategy and is discussed, vis-a-vis this work HERE.

    While you are at it, check out Michael Mann’s book, The Hockey Stick and the Climate Wars: Dispatches from the Front Lines and, again, if you read that please consider giving an honest review on Amazon; Mann’s book is frequently attacked on that site.

    (Speaking of books being attacked, my book, which is a novel and not on climate change, is here. I got badly attacked by Mens Rights Activists who hate me because I’m against rape. The book isn’t even about that, but they are organized and have been in the habit of harassing me and other people who speak out for women’s rights.)

    In any case, you can also up vote reviews you like and down vote reviews you don’t like, on Amazon.

    Finally, a while back I put together a list of climate change related books, HERE. You might find that useful.

    Ebola Perspective: Risks of spread to the US and elsewhere

    LATEST UPDATE HERE

    It is true that this particular outbreak of Ebola has taken health officials somewhat by surprise. It is impossible to know, but I suspect that if you had asked a few ebola experts, a year ago, if there could be an epidemic that would spread across three or four countries, infect a couple thousand people, and last with no sign of letting up for a few months (that is the current situation, more or less), most would say no, probably not, though it is within the range of possibilities. Does the fact (assuming it is true) that this particular Ebola outbreak is unprecedented and kinda over the top even for an over the top disease like Ebola mean that there is something different about this Ebola or this outbreak? That is a question that may be on your mind.

    Another concern is the possibility that since this outbreak involves populations with more mobility including via aircraft than previous outbreaks that the Hollywood Scary Fiction scenario could happen. Here’s how that goes. Someone infected with Ebola, but not symptomatic, gets on a long plane flight, maybe with a few legs and layovers. They start to get sick on the first flight, and after changing planes twice and being very sick for the last leg, they get off the plane and collapse, are taken to a local hospital very far form the Ebola epidemic where no one is expecting Ebola, spend a little quality time in the waiting room, and are finally put in an in-patient unit in a room with two or three other people. Hundreds of people have been near this person. The patient threw up in the bathroom of each of the airplanes he was on, and later someone filled the sink in the same bathroom and used the water in the basin to wash his or her face. He drooled on his pillow while sleeping in his seat, and somehow the person next to him ended up with that pillow and slept on it for an hour. He threw up on some nurses and some orderlies had to clean up his diarrhea in the hospital a few times. And so on. By the end of all of this, a half dozen people are infected with Ebola, including a personal trainer, a grade school teacher, and four nurses. That’s just the first scene in the movie, long before the character played by Morgan Freeman is on the scene, and when the character played by Morgan Freeman shows up, you know things are getting serious.

    A variant of that concern is this: Two aid workers helping with the Ebola epidemic, Americans, catch Ebola and are very ill. It is decided to fly them back to the United States for treatment. This brings Ebola into the US, where it could spread to other people because, well, because Ebola! But is this a realistic concern or just a Hollywood studio’s wet dream?

    At this point in the epidemic we are seeing the usual bifurcation of reaction among the general public, sciency bloggers, and the press. On one had there is growing panic, people either being very scared, for real, or people or press outlets shopping fear on the market because it sells. On the other hand there is the stern corrective statement that all your fears are invalid, Ebola isn’t going to get out of hand, isn’t going to get to the US, there is nothing to worry about.

    At the same time there is a parallel and equally bifurcated rhetoric about the bigger picture, about dealing with Ebola as a public health problem. On one hand you have people asking for a vaccine, or some sort of cure, to address this thus far orphaned disease, because they are worried about it. On the other hand you have people noting that Malaria kills millions a year, and most years, Ebola kills no one, and when there is an outbreak, it only kills dozens or hundreds, except this last time which is still only many hundreds dead and the very low three figures sickened.

    Every one of the above mentioned concerns is valid and invalid at the same time, and every one of the reactions to the current Ebola crisis is both correct and incorrect at the same time. Let me explain.

    What is the meaning of the bigness and badness of the Ebola 2014 outbreak?

    There may be new things to learn about Ebola from this outbreak, but that won’t be until after the dust has settled and scientists have had a chance to look more closely at the data, and the virus, and everything else. But there does not seem to be anything new or unusual about the disease, and I don’t think there is any major difference in how the outbreak is being handled. But there are two differences from earlier outbreaks, one of which is certainly relevant to the large size of this event, the other perhaps important but as yet unclear.

    <li>Most, really all, prior outbreaks occurred in areas where the affected population was relatively thinly scattered on the landscape and the movement of people in and out of the area was minimal and slow. This outbreak is happening where there are much larger concentrations of population and a lot of movement of people.  This has simply upped the chance of transmission in close quarters (higher density) and made for opportunities for spread to previously unaffected settlements.</li>
    
    
    <li>There has been resistance to health workers coming into some villages.  This story is spreading around as though it was a major thing, that large areas were becoming dangerous or difficult for health workers to enter or work in.  We need to be cautious in drawing conclusions from the news.  It is very easy for westerners to slip into blaming the natives for their own difficulties and contrasting native ignorance with Great White Smartness.  There may well be areas where this is happening or important but until there is some actual unbiased carefully collected and evaluated information on this, please don't draw conclusions.  If you hear about something that looks like a great story, there is a good chance that it is a great story.  Emphasis on "story." </li>
    

    This particular Ebola outbreak is really like all the others, but jumbo size.

    Could sick aid workers being brought to the US spread the disease here?

    No.

    You can stand in a room with a person infected with Ebola ten feet across the room from you, and stand there for hours, without a mask, and you will not, can not, get Ebola. It simply isn’t transferred that way. Clean up Ebola vomit, Ebola diarrhea, physically move Ebola victims from bed to bed, give them a sponge bath, tend wounds or other injuries, insert and remove IV’s, handle the bodies of recently deceased Ebola victims, and especially, give traditional treatment to those bodies which, as is done in many cultures, which may involve cleaning and even internal cleaning or handling of organs, etc. etc., and you’ve got a reasonable chance of getting Ebola. Even then, the number of health care workers who actually get Ebola is probably very small. Tragic and horrible when it happens, but a few out of thousands most directly exposed and at risk for months is a small number.

    The people who are being transported to the US are isolated, in negative pressure facilities, and are being handled with kid gloves. Well, latex gloves, actually. They can not infect anybody but their immediate caretakers, and those individuals are very well protected.

    There is a risk of a different sort, though. While these particular patients are being handled with great care, there are healthy helpers, medical workers or others, who have been working with Ebola patients and seem to have not contracted the disease, who are occasionally wandering off to their respective homes and, I’m pretty sure, not being quarantined. I am not sure if all the people involved in helping in West Africa are being tested or properly watched. They may be, but there is some evidence that this is not the case. I’d like to learn more about that, and I hope we don’t learn anything the hard way.

    One US based doctor has returned to the United States and decided to quarantine himself. Alan Jamison will keep himself separate from society for 21 days since his last potential exposure to Ebola.

    If he is doing this on his own, there is the implication that doctors or others who were working with Ebola victims are being allowed two wander off and commune with the rest of us with the prospect that they are infected and eventually could spread the disease. However, I’m not sure that this is true. I don’t know that Dr. Jamison was not tested, I don’t know how much exposure he had and I don’t know what the procedure is for managing this potential problem. This is one guy who may be making hay where there is no grass. Worst case scenario, though, is that a health worker gets sick, the beginnings of Ebola like symptoms emerge, and the health worker gets treated. Nobody who has been working with Ebola patient is going to get a head ache, feel like throwing up, and say to themselves, “Hmm. I wonder if I’ve got allergies or something?”

    We should be worried about people wandering off, leaving the sites of the outbreak, generally. That’s clearly how this has spread to begin with. This applies to health workers and regular people. It applies to journalists in the field. We should not assume, but we can reasonably hope, that people are doing the right thing. But even when they don’t, remember, this is not measles, which is highly contagious.

    (Also, in case you didn’t know, Ebola is of course already in the United States. See this.)

    Can the scary hollywood scenario happen?

    Yes, of course it can. There is nothing in that scenario, taken on its own, that can’t happen. Bodily fluids get around. People are confined on aircraft, share a bathroom, and occasionally eat each other’s cookies by mistake. I don’t think there is any scientifically valid way to suggest that people who are symptomatic with Ebola are anything but a nightmare on a regular airplane flight, hanging around in airports, sharing cabs, et. When I hear international health experts saying that the chance of Ebola transmission on an airplane is pretty much non existent, I want to ask them: Ok, so, you’ll be entering and leaving the sick rooms of Ebola patients, maybe taking your kids along because it’s Follow Your Parents to Work Day, and maybe even have your kid sit next to the patient in bed and read them a story, without any protective gear at all. Right? No, absurd.

    However, the crazy scenario I gave you above, with the vomit and the pillow and the bathroom, requires a lot of things to go wrong in sequence, which is pretty unlikely. Also, the worst case scenario is that a few people end up with Ebola. It would be very hard for that to spread in the US. We’re too good on our health care, even when it seems we are not. On the other hand, if an air route with a symptomatic Ebola patient is sending people to any of many other places, with high population density, little education or information about things like Ebola (or even a belief that it is not a disease you get from other people) and no monitoring, I’d worry that smaller outbreaks could show up in other countries or other cities, in West Africa, elsewhere in Africa, or beyond. You can say that chances are it won’t happen. But it did happen. Ebola is in multiple countries spreading from multiple sites in West Africa.

    I’m pretty sure the people who deal with Ebola, though, try to not take chances. Rhetoric to the contrary is to avoid panic. Avoiding panic is good, and in fact, panic is unnecessary. Ebola is not that contagious. But somewhere between being concerned and avoiding panic by making it sound like Ebola refuses to pass from person to person on air planes, there is clearly something lost in translation.

    Who cares about Ebola, it is not Malaria!

    To me this is one of the most insidious problems we have and it doesn’t just apply to Ebola vs. Malaria. Let me give you an example from an entirely different area.

    How much money have spent on the science of subatomic physics, say, just in the US. And, what are the benefits? More importantly, what were the benefits that were specified at the outset of various research projects, and which of those have been realized?

    The answer to that second question is probably zero, zero. No benefits were specified, and thus, any gained don’t count. You are probably thinking, “No, wait, what about the knowledge, and all that stuff!?? That was surely specified in the grant proposals!” No doubt, but simply advancing knowledge is not a benefit. How do I know that? Malaria! Those physicists may have advanced our knowledge, and as a side effect invented the DVD and stuff, but nobody cured Malaria. Therefore it doesn’t count.

    Sounds like an incredibly stupid argument, doesn’t it?

    Now, side step over to Ebola. Is creating, say, a vaccine to address Ebola worth it? No! Why? Because Malaria! Malaria is way bigger, kills more people, is a truly serious public health problem, Ebola is rare. So if you’ve got some research money don’t spend it on Ebola, spend it on Malaria.

    That would be the smart thing to do!

    This is also an incredibly stupid argument, for a few reasons. The only reason you can compare Ebola and Malaria is because they are both diseases. They aren’t even the same kind of disease, they don’t have the same geographical spread (though it is overlapping). But they are diseases, so when we consider spending resources on research in one, it is natural to compare to the others. But they are also two different things. If I had a million dollars in the bank of my Malaria Vaccine Research Institute and gathered all the scientists together and said, “OK, folks, until we’ve spent this one million dollars, I want you all working on Ebola instead of Malaria, K?” they would look at me funny for a while and then call my wife to take me home. Ebola is a virus, Malaria is a cellular organism. They are very different things. The expertise and lab equipment would not be in my Institute. I might as well tell my scientists to spend a million dollars working on the next generation of high definition TV. That would be cool! And, suggesting that we compare the costs and benefits of that project to working on Malaria or Ebola would be dumb.

    One of the benefits of working on a vaccine for ANY virus is advancing knowledge of vaccines for viral disease generally, and we have a lot of work to do on vaccines for viral diseases. Perhaps work on Ebola would have some great side benefits. Indeed, money spent on a vaccine for Ebola would very likely produce … wait for it … a vaccine! Money spent working on a vaccine for Malaria has thus far failed to produce squat.

    A vaccine for Ebola is probably relatively easy to develop. Ebola is not a human disease. It comes from an animal reservoir. Ebola, if hit with a vaccine in human populations, can’t evolve resistance to that vaccine (or other treatment). Humans have little or no history of immune response to Ebola, and a very long (in essence, multi million year long) history of immune response to Malaria and its cousins. Developing an Ebola vaccine would be like putting up a childproof gate in your house, where the 2 year old is Ebola and the childproof gate is the Vaccine. Developing a vaccine for Malaria is like trying to stop a squadron of Navy Seals from penetrating a drive-in theater at a date and time of their choosing.

    This is why literally billions of dollars has been spent … billions, seriously … on developing a Malaria vaccine and there isn’t one. I would venture to say that if we looked at the part of the money spent on Malaria research in general (including vaccines) that covered just couriers and postage over the years, we’d have enough to fund a full on Ebola vaccine development program. Maybe not. Maybe you’d have to add in a few percent of the money spent on conferences (which are very important, I’m not saying they are not) by Malaria scientists. There is probably more money being spent right now on retirement payments to retired scientists who spent most of their time working on Malaria than needed to build an Ebola Research Center that could get a vaccine out there in a few years. Seriously. Please don’t compare Malaria to Ebola and use that to suggest that we should ignore Ebola. The crumbs that fall off the pieces of Malaria cake at the Malaria birthday party would be enough to handle Ebola. (Bonfire of the Vanities Reference.)

    But still, why should we bother with Ebola?

    Why bother with any disease? Why not figure out which one disease causes the most mortality or morbidity, and disallow any research on anything else? Then, when that is solved, move on to the next one. There are several reasons to not do this. First, it might not be possible to solve the big bad disease quickly, or ever, so the entire research program would spin its wheels forever. Second, the second and third and way down to the tenth or twentieth diseases are all real disease people really get and that really cause suffering. While the argument that spending excessively on a rare disease is a poor choice, spending a modest amount on a very addressable problem that is also small is exactly what we should be doing. Third, you can and should think of some of this as pure research. Pure research is where scientists seek out the answers to questions in a special category of question: Questions that scientists ask. No other criteria need apply. Scientist tend to ask questions that are at the edge of knowledge, or perhaps that are hanging around this or that water hole of ignorance. Scientists ask the questions they ask because they have two characteristics: There is something unknown, and there is something about that unknown thing that is knowable. With research. Usually.

    Now go back to Ebola again. Doesn’t somebody want to know about Ebola? Of course they do. Ebola is one of a family of viruses, the Filovirus family, that includes some pretty benign viruses and a handful of nasty ones (Ebola isn’t the only one). In the past there was a lot of research interest in the filovirus family for use as a biological weapon. Imagine making an Ebola like virus that spread though the air! You could really kick ass, militaristically speaking, with such a weapons. But, fortunately, we as a species have recently decided to not view biological weapons as legitimate. Research on biological weapons continued, of course, long after they were outlawed because we assumed we needed to “understand them” (make them and test them on rats) in case the other guys were making them, so we could deal with them. But I’m pretty sure most of that research has gone by the wayside as well. I would not be surprised, and I’m not much of a conspiracy theorist so I don’t want to emphasize this too much, if a lot of the work to make an Ebola vaccine was in a file drawer somewhere.

    Also, there is the simple stark reality of Ebola. If you are a typical American you may not care about Ebola because it is in a different country and won’t get here and there are other problems. But say you are like my neighbor here in Coon Rapids, Minnesota, Decontee. Decontee is Liberian. She is part of a large Liberian community here in the Twin Cities. Many Liberians are American Citizens with strong ties to Liberia. There is constant travel back and forth. I asked a Liberian guy I know where he gets his sombe (a wonderful traditional West and Central African dish) and he said “From my grandmother.” “Does she grow it?” “Yes. In Liberia. I get it when I go there.” The point is, there is a lot of back and forth. To be an American who is Liberian is to be a member of a community of people who is currently, at this very moment, threatened with Ebola. People in your community, in your family, can get Ebola. Decontee’s husband and her sister in law both got Ebola and died of it last week. Ebola is a problem that affects communities that are Diaspora that include our very neighbors and friends. It should not be an orphan disease.

    So wait, there was way too much nuance and possibly contradiction here, what am I supposed to think?

    I don’t want to tell you what to think.

    But in this case I’ll make a suggestion.

    Do not be worried about the health workers being brought back to the US. Indeed, at this point, openly worrying about this can do little more than make you look a bit dumb and a bit insensitive.

    Yes, worry about the possibility of Ebola getting “out” to pretty much anywhere, elsewhere in Africa, to the US, etc., because it can. But don’t worry too much. The chances are low. Forget about this “Oh, Ebola is not transmitted between people on airplanes” magical thinking. Of course it is. But Ebola is always hard to transmit, even on airplanes. In other words, be realistic.

    Forget about this comparison between Ebola and Malaria. When the Malaria people turn up a vaccine after spending billions of dollars of research money we can make a comparison. At the moment, Ebola is probably a vaccine-ready disease, and Malaria is not. You are comparing apples and oranges. No, worse than that. They’re both fruit. You are trying to compare, in a cost benefit analysis, the efficacy of spending money on a new car vs. working out whether or not it is worth clipping coupons when you go to the grocery store. Why are you doing that?

    But, if you are a member of a community like the various African communities in the US, then you do indeed have more of a concern. Not so much that travelers will bring Ebola to your doorstep, though that is a tiny bit more likely for you than for some others, maybe. But because your community is being directly affected because your community lives in two worlds, and one of those worlds is being invaded by a monster.

    California is clearly exceptional, but not in a good way: #Drought

    The US Drought Monitor produces an assessment of drought conditions every week. The drought in California has taken a large jump over the last few days, with the highest category, “Exceptional,” jumping from 36.49% to 58.41%. At the start of the calendar year, that category was represented in California by 0%, so this is a continuation of an ongoing trend. The image above is the current map from US Drought Monitor.

    I made a couple of other graphics that demonstrate the problem.

    This is the percent area in California covered by severe to exceptional drought since the most recent time that this percentage was at zero, near the end of 2011.

    CaliforniaDroughtPercentSevereToExceptional

    And these two graphs show just the percentage of land area in California covered by Exceptional drought since the beginning of the US Drought Monitor’s data in 2000 to the present (upper graph) and the same information for the last year (lower graph).
    CaliforniaDroughtPercentExceptional

    Note the extreme uptick.

    The drought monitor has a synopsis of the situation:

    Increasingly, drought indicators point to the fact that conditions are not appreciably better in northern California than in central and southern sections of the state. In addition, mounting evidence from reservoir levels, river gauges, ground water observations, and socio-economic impacts warrant a further expansion of exceptional drought (D4) into northern California. For California’s 154 intrastate reservoirs, storage at the end of June stood at 60% of the historical average. Although this is not a record for this time of year—the standard remains 41% of average on June 30, 1977—storage has fallen to 17.3 million acre-feet. As a result, California is short more than one year’s worth of reservoir water, or 11.6 million acre-feet, for this time of year. The historical average warm-season drawdown of California’s 154 reservoirs totals 8.2 million acre-feet, but usage during the first 2 years of the drought, in 2012 and 2013, averaged 11.5 million acre-feet.

    Given the 3-year duration of the drought, California’s topsoil moisture (80% very short to short) and subsoil moisture (85%) reserves are nearly depleted. The state’s rangeland and pastures were rated 70% very poor to poor on July 27. USDA reported that “range and non-irrigated pasture conditions continued to deteriorate” and that “supplemental feeding of hay and nutrients continued as range quality declined.” In recent days, new wildfires have collectively charred several thousand acres of vegetation in northern and central California. The destructive Sand fire, north of Plymouth, California—now largely contained—burned more than 4,000 acres and consumed 66 structures, including 19 residences.

    Volcanoes, Tree Rings, and Climate Models: This is how science works.

    Mark Your Cosmic Calendar: 774/775

    One wonders if anyone felt it. Did Charlemagne feel it as he led his forces across Pagan Saxon Westphalia, knocking down Irminsuls and making everyone pretend to be Christian or else? Did the people of Bagdad, just becoming the world’s largest city, notice anything aside from their own metro-bigness? Did the Abbasid Caliph Muhammad ibn Mansur al-Mahdi have the impression something cosmic was going on that year, other than his own ascendancy to power? Or was it mainly some of the Nitrogen molecules in the upper atmosphere that were changed, not forever but for an average of 5,730 years, by the event?

    The bent tree like object is said by some to be the, or a, Irminsul, the "pagan" sacred object, destroyed by Charlemagne much as one might destroy a hypothesis, either with, or about, trees.
    The bent tree like object is said by some to be the, or a, Irminsul, the “pagan” sacred object, destroyed by Charlemagne much as one might destroy a hypothesis, either with, or about, trees.
    A long time ago, probably in our galaxy but kind of far away, a cosmic event happened that caused the Earth to be bathed in Gamma rays in AD 774 or 775. No one seems to have noticed. There is a mention, in 774, of an apparition in the sky that could be related, but talk of apparitions in the sky were more common back then, before they had certified astronomers to check things out. There is chemical and physical evidence, though, of the Gamma ray burst. The best evidence is the large scale conversion of stable Nitrogen isotopes into unstable Carbon–14 isotopes in the upper atmosphere. As you know, radioactive (meaning, unstable) Carbon–14 is created continuously but at a somewhat variable rate in the upper atmosphere. Some of that Carbon is incorporated, along with regular stable Carbon, into living tissues. After the living tissue is created and further biological activity that might retrofit some of the Carbon atoms ends (i.e., the thing dies) the ratio of radioactive Carbon to stable Carbon slowly changes as the radioactive Carbon changes back into Nitrogen. By measuring the ratio now, we can estimate how many years ago, plus or minus, the originally living thing lived and died.

    But it does vary. Solar activity, nuclear testing, other things, can change the amount of Carbon–14 that gets produced. And, a cosmic event that happened in 774/775 caused the production of enough Carbon–14 to throw off the chronology by hundreds of years. This is seen in the close examination of Carbon in the tissue of trees placed in a tree ring chronology. For example:

    Screen Shot 2014-07-29 at 2.00.05 PM

    Original Caption: High-resolution radiocarbon ages, superimposed on annually resolved radiocarbon measurements from Japan and Europe (grey lines and crosses) as well as the IntCal calibration curve based on decadal samples (blue shading), re-sampled at 5 year intervals (light blue crosses). Radiocarbon ages (that is, using 14C, 13C and 12C isotopes) were determined at ETHZ with the MICADAS system.

    See the inverted spike there? That is, apparently, gamma rays messing up the Radiocarbon chronology. Hold that thought.

    Climate Change Is Hard

    When volcanoes erupt, they typically spew crap into the air. Some of this material stays in the atmosphere for a while (called aerosol, but not your underarm deodorant exactly) which will in turn reflect sunlight back out into space prematurely. This causes cooling. It is essential to know how much cooling of the atmosphere happens from aerosols because this is a potentially important factor in global warming. The effect of aerosols caused by volcanoes or industrial activity is an important term in the big giant equation that puts all the different factors together to produce global warming (or cooling). It is important that climate models be able to accurately and realistically incorporate the effects of aerosols. If the science isn’t right on aerosols, climate models may not run true when aerosols are included.

    Caldera of Mount Tambora.  When Tambora erupted in 1815 we experienced a year without a summer (1816). Tambora was small compared to many earlier volcanoes which may have produced a few summer-less years in a row.
    Caldera of Mount Tambora. When Tambora erupted in 1815 we experienced a year without a summer (1816). Tambora was small compared to many earlier volcanoes which may have produced a few summer-less years in a row.
    And indeed there is an apparent problem. When climate models are run and include aerosols, and the results are compared with real life data where we have good proxyindicators of past climate, the model predictions and the real life measurements don’t line up when aerosols are involved at any significant level. A big volcano goes off, but the proxy record consisting mainly of things like tree rings doesn’t show the level of cooling models predict. This has titillated denialists, as you might imagine, because it shows how the science has it all wrong and the only way to truly understand the climate change is to spend hours in the basement with your spreadsheet and a good internet connection, like Galileo would have done.

    In fact, this was an interesting problem that needed to be addressed. The modeling methods had to be wrong, or the paleodata had to be wrong, or something had to be wrong.

    In 2012 Michael Mann, Jose Fuentes and Scott Rutherford published a paper in Nature Geoscience proposing a hypothesis to explain this discrepancy. The problem was that when a known volcano went off, the tree ring record in particular tended to show only an anemic result. Volcanoes that were thought to totally mess up the weather seemed to have little effect on trees. This even applied to volcanoes which were very directly observed in recent times, when we know there was an effect because people were putting on sweaters and measuring things with actual thermometers.

    Mann et al proposed that rather than having little effect on tree growth, the volcanoes had a huge effect on tree growth. What was being seen by the Dendrochronologists (tree daters, like tree huggers but more serious) as a normal, average growth ring at the time of a volcanic eruption was actually the ring for the next year in line; they were missing, understandably, one or more growth rings. The volcano goes off, the trees don’t grow at all. (The masquerading ring would typically be the year before the missing ring since dendrochronology is done backwards, since we know what year it is now.)

    You don’t have to imagine a year in which no tree grows ever anywhere to accept this idea. The trees being used as temperature proxies are more the sensitive type. They respond to temperature changes by growing more or less (warmer vs. cooler). Trees that don’t do this are not chosen for study. This has to do with the species and the setting the tree grows in, combining to make temperature the key limiting factor most years, so that growth ring width reflects temperature more than any other factor. So yeah, when it gets very cool because of a big-ass volcanic eruption, one of those “year with out a summer” deals, the very sensitive trees respond by not growing at all that year. They may have a growth period of a few weeks, but trees don’t simply lay down wood every day they are biologically acvite. They usually start with leaves, then many move on to reproduction, and once they have finished reproducing, have a cigarette, wash up, whatever, they may lay down wood or roots. (Different species have different patterns). So a very short growing season can mean no ring at all. If a really bad nuclear-winter-esque volcano happens this may go on for a few years. This leads to the growth ring corresponding to the year of the volcano simply not being noticed by the dendrochronologists, with a different year standing in. Over time the record can be thrown off by several years, if there are a few volcanoes and one or more of them affects growth for more than one year.

    So two things happen. Years with a very strong cold signal are lost entirely, and the record is quasi-randomly offset by a few years in some but not all tree records (because some will be thrown off while others are not) so the collective record gets out of alignment. A strong uptick in the signal (the zero growth year) does not contribute to the paleoclimate squiggle of temperature at all, and the other possibly contributing years (after the worst is over) are moved around in relation to each other and average in with less cold years. It’s a mess.

    Consider the following made up numbers representing temperature over time. The top table is the hypothetical raw data of tree ring growth in relation to temperature across a very strong cold anomaly as might be caused by a massive volcanic eruption. Depending on the tree, there is one or more years of zero growth. The lower table is the same set of numbers but with the earlier years (top) shifted down to cover the zeros, because that is what would happen if a dendrochronologist was looking at the rings from more recent (bottom) to oldest; there would just be this void and it would be filled with the next data in line.

    Screen Shot 2014-07-30 at 7.20.34 PM

    Here are the same data graphed showing a clear anomaly in the top chart, but the very clear anomaly utterly disappears because of missing rings and shifting sequences in the lower chart. This is an existential problem for ancient climate events. I squiggle therefore I am.

    Screen Shot 2014-07-30 at 7.16.41 PM

    Mann Et Al proposed adjustments to the record of proxyindicators of temperature that accounted for missing tree rings at the time of major volcanic events. They made a good case, but it was a bit complicated and relied on some fairly complicated modeling.

    Since the publication of Mann et al there has been quite a bit of back and forth between the climate modelers and the dendrochronologists. I’ve assembled a list of publications and blog posts below. I’ll only very briefly summarize here.

    The dendrochronologists had a bit of an academic fit over the idea that they had missed rings. Understandably so. As an archaeologist, I’m partly trained in dendrochronology. There was actually a time when I considered making it my specialty, so I had read all the literature on the topic. I can tell you that missing rings was a serious concern, and taken seriously, and seriously addressed. Seriously, there’s no way modern dendrochronologists would totally miss an entire year’s growth rings. They had ways of dealing with missing rings.

    The thing is, it is actually possible to miss rings. Here’s why. The assumption in Dendrochronology is that rings can be missed (or for that matter, added) for reasons that allow for correction by cross dating growth ring sequences with other trees or even other samples in a single tree. A particular part of a tree can be missing a ring while another is not (especially vertically; the lower part of a tree grows last in many species), or some trees in an area may be missing a ring, but others have that growth ring. This assumption is probably almost always valid; missing rings can ben adjusted for by cross checking across samples. But, if all of the trees of a given species and sampling area have one or more missing rings because of a major volcanic event, that won’t work. But this is not something Dendrochronologists are used to.

    2 + 2 = 774/775

    Eventually Mann and his Colleagues put two and two together and realize that the Dendrochronologists had a way to test the hypothesis that would not rely on fancy dancy climate modeling techniques, and that would potentially allow a better calibration of the tree growth ring record for certain time periods. It was that Gamma ray burst.

    That moment in time is a clear marker. Any system involving Carbon–14 spanning this time interval should show the spike. Well, what about tree ring records that span both a major volcano and the 774/775 event? If Mann et all are right, an uncorrected tree ring record would show a lack of correspondence of any spike at 774/775. But, if missing rings are assumed for sensitive tree records at the time of the volcano, and the tree ring sequence for those trees shifted, perhaps the records will line up. That would be a test of the hypothesis.

    And this is the gist of a letter to Nature from Scott Rutherford and Michael Mann. Very simply put, Mann and his colleagues took this graph, from an earlier paper:
    Screen Shot 2014-07-30 at 8.11.52 PM
    And changed it to this graphic which shows mainly (see caption) the tree ring sequences that span both the 1258 volcanic eruption, which was a big one, and the 774/775 event.
    Screen Shot 2014-07-30 at 8.11.35 PM
    This is a gauntlet, being respectfully thrown down. Mann et al erected a hypothesis, that missing tree rings are virtually universal in large parts of the dendrochronological sample for some events, were not accounted for in the tree ring chronology, and have thus messed up the tree rings as a proxyindicator for temperature. Various attempts to knock it down have not worked out. Now, Mann has himself provided an excellent way to assail his own idea. It is now up to the tree ring experts to try to knock this hypothesis down. I suspect Charlemagne might have had an easier time knocking down the Irminsul.

    I asked Michael Mann how he felt about this latest development in the ongoing saga of the missing (probably) growth rings. He said, “I’m very pleased that we’ve reached some level of reconciliation with our dendroclimatology colleagues: there’s an objective test that is available to determine if there are indeed missing rings in some of the regional chronologies as we have speculated to be the case. I look forward to seeing the results of those tests. We proposed a hypothesis, other scientists were skeptical of the hypothesis, and now there is a way forward for testing the hypothesis. In the end, a fair amount of good science will have been done, and we will have learned something. This is the way science is supposed to work.”

    This is going to make a great Master’s thesis for someone.

    As promised, a list of writings on this topic, organized by date:

    2012 Mann, M.E., Fuentes, J.D., Rutherford, S., Underestimation of volcanic cooling in tree-ring- based reconstructions of hemispheric temperatures, Nature Geoscience, doi:10.1038/NGEO1394, 2012. Press release here.

    2012 Mann Et Al. Global Temperatures, Volcanic Eruptions, and Trees that Didn’t Bark. Real Climate.

    2012 (November) Kevin J. Anchukaitis, Petra Breitenmoser, Keith R. Briffa, Agata Buchwal, Ulf Büntgen, Edward R. Cook, Rosanne D. D’Arrigo, Jan Esper, Michael N. Evans, David Frank, Håkan Grudd, Björn E. Gunnarson, Malcolm K. Hughes, Alexander V. Kirdyanov, Christian Körner, Paul J. Krusic, Brian Luckman, Thomas M. Melvin, Matthew W. Salzer, Alexander V. Shashkin, Claudia Timmreck, Eugene A. Vaganov & Rob J. S. Wilson. Tree rings and volcanic cooling. Nature Geoscience 5, 836–837 (2012) doi:10.1038/ngeo1645

    2012 (November) Mann, Fuentes and Rutherford Reply to ‘Tree rings and volcanic cooling’. Nature Geoscience. 5, 837–838 (2012) doi:10.1038/ngeo1646

    2012 Gavin at RealClimate Responses to volcanoes in tree rings and models

    2012 Esper et al. Testing the hypothesis of post-volcanic missing rings in temperature sensitive dendrochronological data Dendrochronologia. Volume 31, Issue 3, 2013, Pages 216–222

    2012 Esper et al. European summer temperature response to annually dated volcanic eruptions over the past nine centuries. Bulletin of Volcanology. June 2013, 75:736

    2013 George et al. The rarity of absent growth rings in Northern Hemisphere forests outside the American Southwest. Geophysical Research Letters. 40(14) 3727-3731.

    2013 D’Arrigo et al. Volcanic cooling signal in tree ring temperature records for the past millennium Journal of Geophysical Research: Atmospheres. Volume 118, Issue 16, pages 9000–9010, 27 August 2013

    2014 Jull et al. Excursions in the 14C record at A.D. 774–775 in tree rings from Russia and America. Geophysical Research Letters. Volume 41, Issue 8, pages 3004–3010, 28 April 2014

    2013 Mann, Michael, Scott Rutherford, Andrew Schurer, Simon Tett, Jose Fuentes. Discrepancies between the modeled and proxy-reconstructed response to volcanic forcing over the past millennium: Implications and possible mechanisms. J. of Geophysical Research: Atmospheres, Vol 118, 7617–7627.

    2014 Büntgen. Et Al. Extraterrestrial confirmation of tree-ring dating. Nature Climate Change 4: 404-405.

    2014 [Rutherford, Scott and Michael Mann. Missing tree rings and the AD 774–775 radiocarbon event](http://www.nature.com/nclimate/journal/v4/n8/full/nclimate2315.html?WT.ec_id=NCLIMATE–201408]. Nature Climate Change. Vol 4, August 2014.

    Unhappy Anniversary World War I

    But they did not call it that then.

    This isn’t actually the anniversary of the war, but it is the wedding anniversary plus one month of Archduke Ferdinand and his wife, Sophie, and the day the two of them were assassinated by Mlada Bosna. Today, one month later one hundred years ago, the first of several declarations of war was made, by Austria-Hungary against Serbia. After that, it gets very complicated.

    By the end, the Ottoman Empire, the Austro-Hungarian Empire, the Russian Empire, and the German Empire did not exist any more. The German colonies around the world were lost to Germany. The war was fought across Europe and Asia, in many parts of Africa, and even a little bit in the New World. Had things gone slightly differently, the US and Mexico may well have resumed hostilities, and if Mexico prevailed, Texas, Arizona and New Mexico might be Mexican states today. Over forty countries were involved on the “allied” side (or affiliates of the allies) though many on paper. The “Central Powers” (the bad guys) included a minimum of seven countries, depending on what you count exactly as a country. (The Ottoman Empire included a bunch of states.)

    About ten million military personnel were killed in the war, but the number “missing” is almost as large, about 7.5 million. (over 20 million wounded). About seven million civilians were killed. It is almost certain that the Pandemic of 1918 was caused by the war. That killed between 50 and 100 million people.

    Let’s assume the worst. 18 million killed in the war plus imma add 5 million untimely deaths following it from those wounded, and 100 milli0n for the flu, to come up with a total of 123 million people. That’s close to 7% of the world’s population at the time, but concentrated unevenly. The war plus the flu in France (where the war was a much much larger factor) deleted nearly 7 million out of about 40 million, or 18%. Those numbers are very rough estimates.

    Verily, it was the war to end all wars. Except it didn’t.

    So, Unhappy Anniversary.

    Ebola Outbreak in West Africa: Some basic information (Updated)

    LATEST UPDATE HERE

    UPDATE: The latest numbers do not indicate a weakening of the outbreak. (See list of new cases below. Several graphs have been updated as well)
    UPDATE: More detailed discussion of transmission of Ebola
    UPDATE: I note with sadness the death of my neighbor (though I did not know him) of Patrick Sawyer, of the Liberian Ministry of Finance, who died in Nigeria of Ebola contracted in Liberia. He was on his way home to Minnesota at the time.

    There is an Ebola Outbreak currently underway in several West African countries, mainly Sierra Leone, Liberia, and Guinea. This is the most extreme known Ebola outbreak to date. The first known outbreak of this virus was in 1976, and there have been several instances since then ranging from single cases (which by definition are not outbreaks) to 425 confirmed cases (with 224 deaths in that instance, in Uganda, 2000-2001). The current outbreak is significantly larger with about double that number or more.

    There is some confusion in the press (most notably in CNN) about the nature of Ebola and perhaps about some of the details of this outbreak. Here, I want to provide some basic data to help clear some of this up. CNN reported at one point that you can get Ebola only after a person is symptomatic, and (in the same story) at any time a person is infected even if they are not symptomatic. It is probably the case that as long as Ebola is in a person’s system, they can spread it. It is only spread through contact with bodily fluids, but that is not such a hard thing to do; mucus membranes can absorb the virus, as well as cuts or other injuries. It is probably sexually transmittable. It does not appear to be airborne, but bodily fluids that are in or on needles, hospital equipment, etc. can carry the disease to another person.

    Another issue with reporting is the difference between suspected cases, likely cases, and confirmed cases. Even within the health community these numbers are all over the place because they are always changing as cases go from suspected to either eliminated or confirmed. Wikipedia and CNN both recently stated that there have been 1,093 human cases with 660 deaths so far. However, this includes both confirmed and suspected cases. There is a good chance that the total number of cases is in fact close to this, but the data are of lower than ideal quality. If we want to look at mortality rates and changes over time in this outbreak, it is better to look at a smaller subset of the better confirmed data. That’s what I’ll do here. But, when looking at the numbers, keep in mind that although most of the data I show in graphics below show several hundred fewer cases than being widely reported, the actual number of people affected by the disease over the last four months or so is probably not only higher than the cleaned up data set but also, likely higher than the reported 1,093. Furthermore, the data I’m using here only go up to July 24th.

    One of the most egregious errors at CNN is the frequent statement that Ebola has a 90% death rate, but that the current outbreak has a much lower death rate. This is rubbish. Ebola simply does not have a 90% mortality rate, and stating that the current outbreak is much lower in mortality gives the impression that this particular form of Ebola, or this particular outbreak of the disease, is somehow not as bad as usual. In fact, this outbreak is worse than any previous outbreak for several reasons. For one, it is larger. Also, it seems to be not burning itself out like most previous outbreaks did. Ebola outbreaks in the past have tended to happen in relatively isolated areas, because the population that includes victims is in close proximity to the presumed reservoir of the disease (probably fruit bats) and interacts directly with the intermediate hosts (eg. primates or other mammals that picked up the disease from fruit bats*). But there is plenty of reservoir and intermediate reservoir in some areas near major population areas. Apparently, Ebola broke into the human population in one or more areas of high population density, and this density together with relatively high mobility is allowing the disease to persist.

    The following graphs are based on data I collected from the WHO reports. For March, I use only very likely cases, for April through July, I use only confirmed cases (not available for March). And, July does not include the last week for that month (a few more days have been added to this information bringing us to July 23rd, added on July 30th).

    The following charts show the total number of cumulative cases conservatively estimated, and total number of cumulative deaths. When the outbreak starts to weaken, we would see a leveling off, but that is not indicated here (UPDATED).

    UPDATED_EbolaCumulativeCases2014

    The last several reports from WHO (including confirmed, probable, and suspect cases) are as follows:

    July 21st through July 23rd: 108 NEW
    July 18th through July 20th: 45
    July 15th through July 17th: 67
    July 13th through July 14th: 18
    July 08th through July 12th: 85
    July 06th through July 08th: 44
    July 03rd through July 06th: 50

    The exact time spans for each of these reports may not be the same, but I believe the number of cases do not overlap; each listing is a separate set of new cases. Clearly, for the last several days of available information, there is variation in, but no let up in, the number of new cases.

    Looking at the number of new cases reported (and for the most part confirmed) and the number of deaths (the same data as used to make the cumulative graphic above, but by month) we have this (Updated):

    EbolaConfirmedCasesAndDeaths2014

    Keep in mind that the data for July are short by several days.

    Another area where MSM, and for that matter, Wikipedia, could do a better job is in reporting the mortality rate for the disease. Wikipedia states that “The disease has a high death rate: often between 50% and 90%.” This is misleading because the outbreaks with 90% mortality rates are not typical, and the statement seems to be based on a set of data that includes a lot of data points one would do better to ignore. I assume CNN is taking this information (from Wikipedia or elsewhere, which perhaps repeats the Wikipedia claim) and exaggerating slightly when they say that Ebola normally has a 90% mortality rate.

    The Ebola affecting people right now in Africa is one of a handful of similar viruses known over a larger geographical range. Some of the deaths found in the larger data set of all known outbreaks are from individuals who showed up in a hospital nowhere near where they got the disease, or laboratory workers. The best way to estimate mortality rates related to the present outbreak in West Africa is to take only field cases — actual outbreaks in normal populations — in Africa only, and to not count “outbreaks” that are not outbreaks because only one person is in the sample.

    The following chart compares mortality rates for all of the “outbreaks” listed in Wikipedia page regardless of size of sample, geography, or circumstances, with only those that are African Ebola in the field. The latter set also excludes the present outbreak.

    Ebola_Mortality_Rates

    Notice that the clean data are bimodal; some outbreaks have mortality rates between 0 and 90%, others between 40 and 60%, and not much in between. Also, there are several in the all-data set that have a mortality rate of zero. This bimodality is not necessarily a persistent statistical characteristic of the sample; I could make it go away by changing the histogram intervals. But it is a convenient place to break the sample into “more severe” and “less severe” outbreaks.

    The zero cases in the full data set are all odd cases. Seven are not in Africa and include in some cases lab workers or animal handlers, and most are not African (Zaire type) Ebola. One is a scientist who caught the disease from doing a necropsy on a chimp in the Ivory Coast, examining an outbreak among the non-human primates there. There is one case where the fatality rate is 100%, but this was only one person, and the case was discovered post hoc. We don’t know if anyone else there had the disease. A 90% mortality rate occurred in a remote part of the Congo, with 143 people affected including health care workers. It appears that several individuals contracted the disease butchering non-human primates. This occurred during suboptimal conditions during the Second Congo War. One case of 88% mortality occurred early on in the history of the disease (the second known outbreak) also under very poor conditions. Although the data are too sparse to draw firm conclusions, it seems that the more severe outbreaks in terms of mortality tend to have occurred under more difficult conditions.

    Ebola probably has a very high mortality rate when an infected person gets no medical treatment, and a mortality rate closer to 50% when a person quickly gets medical attention. There is no cure, but when a patient is given IV solutions in a hospital setting the chance of survival goes way up. This might suggest that smaller outbreaks that run their course before intervention would have a higher mortality rate, or that the mortality rate would be higher near the beginning of the event. Similarly, one might expect mortality rates to be higher in the early years of Ebola than later, as treatment methods developed.

    There is some, but not much, evidence for these effects.

    The following chart shows mortality over size of the outbreak, using only the cleaned up data set:

    Ebola_Mortality_Rate_Over_Size_Of_Outbreak

    There is not a relationship between size of outbreak and mortality rate.

    This chart shows the mortality rate over time, for the cleaned up data:

    Ebola_Mortality_Rate_Over_Time

    This seems to show that lower mortality has been achieved in recent outbreaks, though the statistical significance of this is non existent. But, the data set is small. The above chart also indicates the average morality rate across all of these events, which is 64% across 18 outbreaks. Not “usually 90%” as CNN states.

    The following chart shows the approximate mortality rate for the current outbreak by month.

    Ebola_Outbrak_2014_Mortality_Rate_By_Month

    This is calculated from confirmed or highly likely cases. This is not a true mortality rate because people who got the disease in one month may have died the next month. But it does give an approximate indication of change over time in rates. The rate at the beginning of the outbreak could be high, or this large percentage could be a function of how cases were counted. In any event, this is an indication of higher mortality rates calculated at the beginning of an outbreak, and there are likely two reasons for that high rate, either or both applying in a particular case.

    <li>Early in an outbreak a number of people are affected, but live, and don't make it into the data  base because they are not identified; they got sick, got better, and went on their way. Those who died were all or almost all counted. </li>
    
    
    <li>Early in an outbreak a number of infected people are not treated with the maximum available medical attention, so more of them die.</li>
    

    The current outbreak is settling in at about 60% mortality rate. There is no indication from WHO that the epidemic is slowing down.

    UPDATE: Is Ebola Only Transmitted By Symptomatic Individuals?

    According to the usual sources (WHO and CDC for example) the following is probably true. When someone gets Ebola, typically, after a while they get sick. This means they show symptoms. If they did not show symptoms they would not be “sick” even if the virus was in them and even if the virus is multiplying in them. Presumably people are infected with a sufficient number of viroids that they become a host for the disease, the virus starts to multiply above some level that makes the person sick, and we can say at that point that they “have Ebola.” This is when the infected person is able to transmit the disease to others through bodily fluids that might come into contact with wounds or mucous surfaces in the downstream patient.

    This is what the WHO and CDC literature on Ebola says, and this has lead bloggers and news outlets to state incorrectly that Ebola is only transmitted to others when the person shows symptoms. Unfortunately this is not true in one or possibly two ways.

    It appears that people who have had Ebola, live, and get “better” (i.e., their symptoms go away) can still carry Ebola for a period of time, and in this state, they can still transmit it. What has probably happened is their immune system has started to fight the virus enough that it is attenuated in its effects, but it isn’t’ entirely gone yet. Medical personnel like to send someone home only after the virus has cleared. Even so, men who are supposedly virus free by that standard, when sent home after surviving Ebola, are told to avoid sex for several weeks because there is still the possibility of sexual transmission of the virus. Meaning, of course, that the virus is still knocking around in some individuals at this point, and still transmittable. It is not clear how likely that is to happen.

    This is very important. Most people would interpret “only transmitted by people showing symptoms” (or words to that effect) when they read it in a news outlet as meaning – well, as meaning exactly what it says. But post-symptomatic patients may still transmit the disease.

    Is it possible that pre-symptomatic people can transmit the disease too? Personally I think it is possible even if it is generally unlikely. In a disease that kills over half of those who get it, “unlikely” is not comforting. A small percentage of people who never seemed to have had Ebola, or to have been exposed to it, seem to have antibodies that would probably only develop if exposed to Ebola. Some studies have shown immune reactions to Ebola in those known to have been exposed but also known to not have gotten sick. This is important but not shocking. There are a number of different situations where a normally icky disease that makes you really sick seems to have infected a certain percentage of people asymptomatically. Are these people carriers at some point, i.e., people who have the virus in them, can transmit it to others, but don’t get sick themselves? There is no evidence to suggest that this is the case with Ebola, but the total number of known human cases of Ebola is very small and the conditions for study of the disease in the field very poor, so the safest thing to conclude is that we simply don’t know, but it is also reasonable to say that asymptomatic carriers don’t seem to be a problem, or this would likely be noticed.

    The important point here is that there is not a perfect correspondence to being infected and having symptoms, and transmission post-treatment and survival is possible and of sufficient concern that WHO and CDC assume it, so it would be unwise to make too many assumptions about pre-symptomatic transmission.

    Imagine you are a health care person addressing an Ebola epidemic. An jet liner flies over a very long flight, say 10 hours long, on Monday. On Friday five people who were on the plane come down with Ebola and you have reason to believe that they were all infected before the flight. Would you determine that it was impossible for the nearly 300 people stuck on a tube with five pre-symptomatic Ebola carriers to become infected? No. You would watch those people and test them.

    An additional point to underscore; it has been touched on but not emphasized. The symptoms of Ebola include vomiting and bleeding from places one normally does not bleed. Put another way, the symptoms of Ebola include spreading around bodily fluids. This is often how diseases spread. The disease results in a bodily reaction that spreads the disease (look up “virulence”). So, no matter what, the most likely transmission by far is during the period of symptomatic reaction to the disease, or for some time after death while the virus is still viable. That does not mean that there is no transmission before or after, but it does mean that the most obvious transmission will be from symptomatic patients or recently diseased symptomatic patients.


    • Fruit bats will drop fragments, or stones, of fruit they feed on, sometimes in discrete piles. It is almost impossible to imagine a ground dwelling frugivore, such as a chimp or a duiker, not stopping to munch on this detritus. Since Ebola is spread through bodily fluid contact and can be spread via mucous membranes, and fruit bat spit counts as a bodily fluid, I’m personally of the opinion that this is how Ebola may often transfer from its natural reservoir, where it seems to exist without harm, to other animals. Of course, I figured this out after having discovered and handled several such piles of fruit bad wadge.

    Matt Entenza's Claim Rejected By Three Judge Panel

    The 2000 election was probably won by Al Gore. But George Bush was put into office anyway. Imagine what this world would be like had Gore been ensconced in the white house? The Tea Party would probably have emerged sooner and madder, but less organized; global climate change would have become a widely accepted issue to do something about within a couple of years, instead of much later (cuz, you know, that hasn’t even happened yet). We probably wouldn’t have had this war in Iraq. If Gore had continued Clinton’s policy dealing with Al Qaida and Osama Bin Laden (no relation) there probably wouldn’t have been a 9/11. I’m sure we’d have other problems, but none of those problems.

    As you know, national elections are actually handled by states, and states are charmingly diverse in how they do that. For instance, the technology of elections, and what you have to do to prove you are eligible to vote at the polling place, vary across states. But after the 2000 election there was some movement to make the system work better, to implement chad-free technologies, and to update the procedure for determining eligibility.

    Eventually, of course, the changes got politicized. Everyone knew that Democratic voters and Republican voters are different, not just in their politics or who they vote for, but in how they vote. The Lockstep Party, Republican, is more homogeneous and generally privileged. You want to vote, you stop in at the voting place on the way home from work and vote. You know where it is because it is the church you go to, you have a car so transport and weather are not issues, you have access to information which is all in English and that is your native language, so you know things like when election day is and so on and so forth: Democrats have that too, but being a big tent Democrats also have other folks. Recent immigrants who don’t understand the system, older folks who don’t have a car and have a hard time getting across town, people who don’t happen to go to the well established local church so they don’t even know where it is. Also, among Democrats are people with overt labels as to how they are likely to vote. You can’t wear as button on your shirt declaring your support for a candidate, but you can, say, be black, and therefore visibly less likely to vote for the Republican. This last bit allows people who control the polls to harass or turn away certain voters.

    At some point in recent history, Republicans got aggressive with strategies that would make it hard for that diverse subset of Democrats to vote. Some of those strategies are just downright dirty and illegal. When I was working on Get Out the Vote for some Democratic Candidates a few years ago I found recent African immigrants, likely Democratic voters, who had been told by Republican operatives that “Republicans vote Tuesday, Democrats vote Wednesday. So go vote Wednesday.” Seriously.

    But there are other, no less unethical but potentially legal, methods of keeping a small percentage of Democrats from voting, such as requiring certain kinds of ID that not everyone, especially Democrats, has.

    But these techniques, known these days as “Voter ID Laws,” did not come on the scene until after the 2004 election. While there may have been a few earlier efforts, one of the first state level attempt to restrict voter access occurred in Georgia in 2005, a push by Karl Rove to look into voter fraud by immigrants in 2007, and ACORN’s war on voting the same year.

    Prior to that, there wasn’t much going on at the state level along these lines. In 2003, in Minnesota, there was nothing. The legislature did take up the issue of voting, and made attempts at upgrading and improving voting systems, but this was not an attempt to disenfranchise voters. That didn’t happen in Minnesota until later, peaking with the 2012 Voter ID constitutional amendment, which was pushed by Republicans and opposed by DFLers (Democrats), and which was clearly defeated.

    Now fast forward to the 2014 Minnesota State Auditor’s race.

    The incumbent, Rebecca Otto, widely recognized as one of the best Auditors the state has ever had, is being challenged in the primary by Perennial Candidate Matt Entenza, who is widely seen as making a run at the Auditor’s seat because it is a potential stepping stone to the Governor’s office, and he really wants to be Governor, and apparently will do anything to achieve that. Years ago, back in 2003, before “Voter ID” was a thing, before the Republican War on Voting had taken off, the Minnesota legislature messed around with some voting laws, in an effort to bring the states procedures in line with a national voting act, sincerely trying to modernize and update our system. It was a Democratic run legislature. There were votes on two separate bills and their amendments, and later one of the bills went to the Senate, was returned later, and passed. The exact details of what happened are rather complicated and perhaps I will write something up on that at another time. It is worth noting that Otto’s votes were in line with those of liberal democrats like Michael Paymar, Jim Davnie, and Paul Thissen. The point is, a) there was no Voter ID effort at the time so b) Rebecca Otto did not support one. When you look in detail at Otto’s votes on the various bills and amendments, there is not “supporting Voter ID” like pattern or anything, really, of note. The final bill, which I believe Otto voted in favor of, did not have the showing of identification in it.

    Entenza and Otto, both in the house at the time, voted differently, Otto in favor, Entenza opposed.

    This was before, remember, the Republican War on Voting, which we saw more recently.

    Later, when “Voter ID” became a thing being pushed by the GOP in Minnesota, pretty much all Democrats, including Rebecca Otto, opposed it. Otto in particular campaigned vigorously against it. Her position today is that she opposes what we call “Voter ID,” which is a post 2004, or even, post 2007, effort, engineered by Republicans, to limit access to the voting booth mainly by a subset of Democrats.

    In June, Matt Entenza filed a complaint with the Office of Administrative Hearings of the State of Minnesota, that Rebecca Otto had lied in official campaign information in saying she is an opponent of Voter ID. Entenza adduced her 2003 vote as evidence that she was in favor of it. That was a lie by Entenza, a lie designed to look like an accusation of someone telling a lie.

    The three judge panel that reviewed the case not only rejected Entenza’s claim, but also, noted that even if they put the complaint in the light most favorable to his claim they could not come close to accepting it as valid. This finding was correct. There was no “Voter ID” thing to have voted for or against in 2003; After Entenza made the claim that Otto had supported “Voter ID” in such a way as to make people think she supported the recent 2012 Republican plan, someone asked Otto on her Facebook page about it, and she responded in this private forum. That was not an official campaign document. And, at the time, everyone who knew anything was shaking their head wondering what the heck Entenza was talking about when he referred to Voter ID back in 2003. It simply wasn’t a thing. The judges agreed that the complaint was unfounded for these several reasons.

    In other words, they said that Entenza was wrong, and they implied that his intention was not entirely honorable.

    In response, Entenza’s campaign manager got himself a shovel and is digging in. Entenza will still campaign on this absurd ruse.


    Additional Sources:

    DFL auditor spat generates complaint

    Panel rejects Entenza’s voter ID claim in state auditor race

    Entenza voter ID complaint against Otto dismissed

    The Questionable Attacks On State Auditor Rebecca Otto

    Feral Cats as Invasive Species

    The ranger stood on the dirt road, facing south, and the rest of us, scattered about the parked safari truck, facing north and paying close attention to what she was saying. The sun was slipping quickly below the red sand dunes to our west, and the day’s warm breeze was rapidly changing to a chill wind. She talked about what we might see after we remounted the safari truck, which we had just driven out of the campground at the southern end of Kgalgadi Transfrontier Park, where we were staying in the South African camp, just across from the Botswana camp. This would be a night drive, cold, dark, uncomfortable seats, loud engine in the giant 26-seater truck, scanning the brush and the roadside with three or four strong spotlights wrangled by volunteers among the nature-loving tourists, and of course, the headlights of the truck. But for now the sun was still up and if anything interesting came along we’d see it just fine in the dusk.

    And, of course, something interesting came along. Just as the ranger was telling us that we might see wild cats – well, not wild cats, but rather, Wildcats, the wild version of the domestic cat, Felis silvestris lybica, one of those cats popped its head out of the brush about 50 feet beyond her. As she continued her monologue about these cats, the Wildcat cautiously walked in our direction, never taking its eyes off of us, stiff-legged, ears motionless, striped like a standard “tiger” domestic cat but entirely in grays. The most interesting thing about this cat was lack of kitty-cat-ness. It was not a kitty cat, even though all of its relatives in the Americas were. It was deadly serious, intense looking, nothing like a kitty cat at all. And just as the ranger finished her monologue with “… so if we’re lucky, we’ll see one of those cats” the person standing next to me intoned, in a mimicking fake british-sounding accent to match the ranger’s South African dialect, “You mean like that one, there?” and all of us pointed simultaneously to the wildcat now about 10 feet behind her.

    She turned, looked, and by the expression on her face I guessed she was thinking “Goodness, I’m glad that was not a lion.”

    … READ THE REST HERE …

    Global Warming’s Impact on Hockey: NHL is concerned.

    The original hoser, I’m told by an unimpeachable source from way up in Canada, was the guy who went out to his front yard in the middle of the winter and hosed down the lawn in order to make some flat ice, so he and his friends could play hockey. A better way to get ice is to find a cove or embayment along a small lake that is protected from the wind; clear off the snow and you’ve got a nice flat surface. If that is not available, clear the snow off the rugged and rough ice that forms on many lakes, build a dam of hard packed snow around it … and hose that down. Even better, build a partly enclosed structure, with low walls all around and a rough and ready roof overhead, and put a naturally freezing hockey rink in there. Make sure to add a warming shack nearby because it can get mighty cold.

    All these things were done to make places to skate, and in particular, to skate with sticks in the game of hockey. Later, and more expensively and more rarely, were built buildings with central heating and an ice rink in the middle, which is a bit of a technological challenge requiring expensive machinery. But this approach can be done anywhere in the world. Hockey is a Winter Olympic game you can play anywhere, no matter what the geography or the weather, because of this technology

    But to produce a plethora of players who someday might be pro hockey, you have to hose down the yard or have a local community outdoor rink, affordable, accessible, to serve as the starting point for so many so that so few can be so good. This is why Hockey is more of a northern sport; it is played widely all across Canada and the northern tier of US states, because that is where the natural ice, on small ponds and lakes, and the nearly natural ice of the outdoor rink, is to be found reliably.

    Until now.

    Sustainability is one of those hippie words, like recycling and om. But sustainability is also a real thing that even those who distain the culture of thoughtful treatment of the earth must pay attention to, if they want to be, well, sustained, in their pursuit of important things like hockey. The National Hockey League understands this, and recently issued their “2014 NHL Sustainability Report” in which they note that hockey is in trouble because of global warming. Simply put, those ponds and lakes and hosed-down yards have become increasingly unreliable as many winters are just too warm to allow their development and maintenance. In many areas, it was once the case that all a young person needed to play hockey was a good pair of skates, a big stick, and a love of pain (apparently). Nature provided the ice. But now nature, messed with by humans, has become an unreliable partner. The report faces off with a letter from Gary Bettman, NHL Commissioner, who states:

    But before many of our players ever took their first stride on NHL ice, they honed their skills on the frozen lakes and ponds of North America and Europe. Our sport can trace its roots to frozen freshwater ponds, to cold climates. Major environmental challenges, such as climate change and freshwater scarcity, affect opportunities for hockey players of all ages to learn and play the game outdoors…

    As a business, we rely on freshwater to make our ice, on energy to fuel our operations and on healthy communities for our athletes, employees and fans to live, work and play. Moreover, to continue to stage world class outdoor hockey events like the NHL Winter Classic, NHL Heritage Classic or NHL Stadium Series, we need winter weather….

    This is all part of NHL Green, an effort to document the leagues environmental impact, and possibly, to do something about it. Currently, it seems that the league is mainly focused on documenting that they have a tiny impact on the environment compared to the entire world put together, but the are also working to offset impacts and raise awareness of related issues.

    Dr. Allen Hershkowitz, of the Natural Resources Defense Council, also has a cover letter for the report:

    You are about to read the single most important document about the environment ever produced by a professional sports organization.

    The 2014 NHL SUSTAINABILITY REPORT is the first ever such report produced by a professional sports league…

    … No league has ever produced a sustainability report that is so thoughtfully crafted, honest about its limits and emphatic about the urgent need to protect our planet. And no league has ever been so frank about the risks to its very existence posed by climate change.

    This document is an important reminder to all sports fans, leagues, teams and businesses that while natural hockey ice might be the “canary in the coal mine” when it comes to the effects of climate change on sports, the effects of climate disruption are a challenge to all leagues and businesses, and we must take meaningful action to reverse course.

    … this report underscores the fact that there is no action too small to undertake when it comes to addressing our ecological problems. After all, there is no single law or single business undertaking that by itself can remedy the problems posed by climate disruption, biodiversity loss, water scarcity, ocean acidification and so many other ecological pressures. We have no choice but to implement many small steps that will collectively add up to meaningful ecological progress.

    This, in my view, is part of the shift in the cultural landscape we need to see in order to more effectively address climate change. The acceptance of climate science and the will do to something about global warming tends to distribute along a left-right political axis, with the left being more understanding and demanding, understanding of the importance of climate change and demanding that we do something about it. But this axis also sorts out other features of society, and team sports (especially some team sports), farming, and the military, to name just three examples, tend to more or less be distributed right of center. Lately we’ve seen a dramatic increase in concern over climate change by farmers; the military has been addressing climate change vigorously, despite efforts in the Tea Party Congress to thwart that, and now, hockey, the rightest and whitest, if you will, of the team sports, is chiming in. Because ice melts when it gets warm. Global warming. Its a thing.

    How warm will 2014 be?

    We just experienced the warmest two months (May and June) on record, meaning, essentially, in well over 100 years. This is because of anthropogenic global warming (AGW). Does this mean that 2014 will be the warmest year on record? Probably not, in part because February was pretty cold and that lowers the score for the year. But it will be a warm year.

    There is a strong correlation between the temperature in June and what turns out to be the global mean for the year. This can be shown empirically by calculating a simple correlation coefficient for each month of the year and the year’s average. For this I used the GISS anomaly data.

    Screen Shot 2014-07-23 at 11.03.39 AM

    Clearly, the ability of a month to predict the year follows a seasonal march, with June and its sibling months performing the best. I asked Michael Mann about this and he told me, “I think it is simply a consequence of signal-to-noise. Boreal summer has a large signal-to-noise ratio because the effects of radiative forcing are relatively large compared to those of internal atmospheric dynamics. Winter on the other hand tends to be dominated by synoptic and planetary-scale dynamics, meaning the signal of forcing is buried in more noise.”

    Makes sense and the data shows this.

    So let’s use June to predict 2014. Running all the data from GIS through a simple regression model, we get this:

    Screen Shot 2014-07-23 at 1.16.45 PM

    Yeah, I know, no axes lables. This is just a quick and dirty exercise in Science by Spreadsheet! This is June temperature anomaloy on the X axis and annual on the Y. The black regression line has the indicated R-squared and model formula. I added a second order polynomial regression line (in red) to check to see if the ability to predict goes haywire for the higher temperature values (which are also the more recent years). I’m going to say it doesn’t, though if we do a similar model regressing the second half of the year on the first, there is a skew with the higher (and thus later) values:

    Screen Shot 2014-07-23 at 1.14.53 PM

    So, I’m reasonably confident that June is a good predictor of the year, though I’m also sure that this method won’t predict the exact ranking for a given year. But we can try it anyway. Here is a list of all of recent years sorted by how hot it got (using the same data) with 2014 added in as a prediction (the rest of the GAT numbers are observations).

    Screen Shot 2014-07-23 at 11.43.13 AM

    Using this table we can see two things. First, it would take only a small difference from the prediction to move 2014 up or down. The average amount the predictions for these years are off is actually large enough to move 2014 up to the third slot, or down to the tenth slot or so, very easily. But given only this prediction, we might expect 2014 to tie as the fifth warmest year (if we round it off) or to be the sixth warmest year, more or less.

    This assumes we don’t have warming effects of an El Niño this year. If we don’t I’m going to guess that 2014 will be about in the middle of the top ten years ever. If we do have an El Niño that affects temperatures during the last few months of the year, we could see a 2014 that is closer to the top of the pile.

    That’s my story and I’m sticking to it. Until more data comes along and then I’ll revise as needed, of course.

    Here’s a video from Paul Douglas discussing June’s temperature record:

    Is Matt Entenza really from outstate Minnesota? No, he is not.

    [Updated: Letter to the Editor, Worthington Daily Globe.]

    This is a followup on my earlier post (see “How do you say “Surprise” in Norwegian? The word is “Entenza.” I am not making that up” also reposted here) on Matt Entenza’s bid for the DFL (Democratic Party) Primary candidacy for Minnesota State Auditor.

    Entenza claims he is from Greater Minnesota, and thus, would do a better job representing the interests of Greater Minnesotans. This implies that highly acclaimed sitting State Auditor and candidate for re-election Rebecca Otto is not doing well in this area. In fact, she is doing very well. She is recognized for her fair and non-partisan treatment of people and local governments across the state. The previous State Auditor used the position in a more political way, implying bias, and voters rejected that approach by the largest upset of an incumbent in 112 years when Otto was first elected. It is now well-understood, here and nationally, that Otto is doing it right.

    This is similar to the misleading language Entenza is using on pensions and social security. "Too often these days, we hear stories about how folks who worked hard and played by the rules their whole lives have their retirement at risk by poorly managed pension funds and Wall Street middle-men that charge exorbitant fees. Privatization of pensions is unacceptable. Minnesotans’ pensions should not be privatized and that Wall-Street middle men have no business near our pension plans.” This, again, implies that Otto has somehow been involved in privatizing pensions. She has not. In fact, a review of Otto’s website shows that she has been leading the charge against the move to privatize public pensions, and that the Public Employee Retirement Association is stronger than ever on her watch.

    A similar thing happened in a recent news article about Otto leading a national conference of State Auditors, bringing the State Auditors from around the country to Saint Paul. A few accounting firms that work with local governments were some of the conference sponsors. Entenza said of this, via his campaign mouthpiece, that "The people being regulated should not be paying for lavish events for those doing the regulating. Attending parties and events thrown by firms the auditor is supposed to be watchdogging is not how Matt Entenza will run the office.” Again, this is a blatant attempt to mislead voters. The State Auditor does not watchdog or regulate private CPA firms in any way, and there were no lavish events at the conference. In fact, the conference was part of required continuing education classes that help auditors keep up with the latest laws, regulations and trends. So here, Entenza would have readers believe that all State Auditors from around the country are somehow having a conflict of interest. Really? He says he wouldn’t attend such conferences if elected. How then, one wonders, would his staff be able to do their jobs?

    But let’s get back to the Greater Minnesota claim. While Entenza is making a cultural and geographical claim about himself (that he grew up in Greater Minnesota), Rebecca Otto is not. Her personal growing-up history is not part of her campaign, though her education and experience as an adult is, and her background is impressive. But when I looked into it further, I found out that Rebecca Otto and Matt Entenza are roughly similar in their geographical background, and that Entenza’s claim is apparently – surprise – (or, as Wikipedia would have it, "Entenza!”) bogus.

    One of my favorite tales from Lake Wobegon, Garrison Keillor’s fictional-but-realish small town in Minnesota, is the one about the family that moved to California then returned later for the wedding of their daughter. The wandering Lake Wobegonites had changed from having lived for years in the Sunshine State. They wore sunglasses, even inside. They spoke of their lovely garden, but admitted they had a gardener. The good people of Lake Wobegon said nothing in response to this, but we know they were thinking “Gardener? Who has a gardener? That would be like having someone cut your food for you.” The joke here is based on the idea that Minnesotan life and culture, especially Greater Minnesota life and culture, is as different from California culture as any two samples of American life can be. These characterizations are, of course, humorously exaggerated imitations of American life, and to humorous effect. But it gets the point across; outsiders, represented by people from California, are suspicious. Never mind that Minnesota is a place of immigration. During the time that our Euro-American culture was forming, with the Minnesota Nice and the Upper Plains sensibility thing and all that – around the beginning of the 20th century – the vast majority of Minnesotans were not born here, or one or both parents who were not born here. The explosive economic growth just before the Bush Recession included a large number of people who moved here from the coastal regions, though we seem to focus on those who moved here from other countries. The point is, there may be a real but low level xenophobia in our state, which is a little quaint but often annoying, and not justified. I’m from New York State (which I know annoys a lot of you). In New York it is not uncommon to be represented in the US Senate by people who had to move there to run for office. This annoys some, but for most it is regarded as a good thing. New York State sometimes gets to be represented by very powerful people who have to work very little to get their voices heard. Robert Kennedy and Hillary Clinton are examples of this. Minnesota has its own history of people not born here still being claimed as strong, good looking, or above average. Elmer Anderson, the most beloved of governors, was not born here. One of our two most famous Charlies, Lindbergh, was born in Detroit. There are others. My point is this: As an outsider (though I’ve lived here as long as I lived in New York) I have noticed that “Candidate X is from this community s/he bids to represent” is a standard line in politics. Just so you know: Not everybody, across this country, does that. That’s a Minnesota thing. (And a few other places.)

    Putting all this aside, one could still argue that the people of Minnesota are so provincial, especially those who live in Greater Minnesota, that they would prefer to be represented by someone exactly like themselves, historically and demographically. Matt Entenza is making the claim that he is “one of them” apparently for this reason. This seems a bit paternalistic.

    And, paternalistic or not, he isn’t. From here.

    Matt Entenza claims he is from Worthington, a small town in Out State Minnesota. In fact, he was born in … wait for it … California. He grew up not in Minnesota at all, but in Santa Monica, and his family moved to Worthington when he was 15. He attended and completed high school there. He then moved out of state again, having lived in Greater Minnesota until he was about 18, we assume, so about three years. He did a year or so at Augustana College in South Dakota, which is not in Minnesota, an Evangelical Lutheran private college. He then transferred to a private college in Saint Paul, Macalester. After graduating from Macalaster he moved out of state again, actually out of the country, to follow Lois Quam during her Rhodes Scholarship at Oxford. The one in England. Later, he went to law school in Minneapolis. After that, he clerked for a Minneapolis-based judge. (Details from here.) He now lives in Saint Paul.

    By Entenza’s standards I’m Congolese because I lived in the Congo for more time than he lived in Greater Minnesota.

    I don’t think it matters that Matt Entenza is from California, but it does matter that he claims that he is from Greater Minnesota and that being from Greater Minnesota is important. Even more importantly, perhaps, is that he seems to assume that people from Greater Minnesota would buy this.

    I respect Entenza’s background. Personally I think everybody who is in charge of anything in Minnesota should go live in coastal states for a couple of years. Being from New York, I am forever seeing things done here in Minnesota that I feel very strongly would be done differently if only people knew how the decisions they are making would play out with increase in population size and density. Boston, where I lived for several years, spent more money than has ever been spent ever anywhere at any time on a public works project to rebuild their main urban highway system, because the original system was put in place and evolved with insufficient forethought. We should be learning those lessons and avoiding those mistakes. Want proof of that? Spaghetti Junction, Crosstown X I35W and the KMart on Nicollet Avenue. On. Nicollet. Avenue. Say no more. Having people in important positions who have experience living elsewhere, and good educations (which you can get here but you can also get elsewhere) is a good thing. Good for you, Matt Entenza, for being a man of the world, who still respects and likes Minnesota. I’d vote for you in part for that reason if your other ducks were in the proverbial row.

    But no, the ducks, they are askew. Entenza had to, essentially, alter his resume to say, or at least strongly imply, that he is is from Greater Minnesota, and thus, will relate to people from Greater Minnesota. He isn’t, he won’t, and making this claim is itself the kind of misleading, pandering that one would think is subject to audit.

    The Expansion of Antarctic Sea Ice and Self Correcting Science

    One of the things climate change science deniers say, to throw you off, is that Antarctic sea ice is expanding. They even claim that the amount of expansion of Antarctic sea ice offsets the dramatic retreat of Arctic sea ice (see this for the latest on the Arctic). I’ve even seen it argued, in that famous peer-reviewed publication Twitter, that there is an inter-polar teleconnection that guarnatees that when the ice on one end of the earth expands the ice on the other end of the earth contracts, and visa versa, so everything is fine.

    That Antarctic Sea ice is expanding has become standard knowledge. (See “Why is Antarctic Sea Ice Growing” for more.) It is a simple fact of nature that needs to be explained and addressed. The expansion of Antarctic Sea ice is one of the very few apparent reversals in climate change related trends across the world. And, there have been many explanations for it.

    Or is it?

    It turns out that we don’t know if Antarctic sea ice is expanding. A new study just released looked at Antarctic sea ice to examine the idea, which has been batted around for a while now, that there is something wrong with the data. The study, by Eisenman, Meier, and Norris, published in The Cryosphere, found this:

    Recent estimates indicate that the Antarctic sea ice cover is expanding at a statistically significant rate with a magnitude one-third as large as the rapid rate of sea ice retreat in the Arctic. However, during the mid-2000s, with several fewer years in the observational record, the trend in Antarctic sea ice extent was reported to be considerably smaller and statistically indistinguishable from zero. Here, we show that much of the increase in the reported trend occurred due to the previously undocumented effect of a change in the way the satellite sea ice observations are processed for the widely used Bootstrap algorithm data set, rather than a physical increase in the rate of ice advance. Specifically, we find that a change in the intercalibration across a 1991 sensor transition when the data set was reprocessed in 2007 caused a substantial change in the long-term trend. Although our analysis does not definitively identify whether this change introduced an error or removed one, the resulting difference in the trends suggests that a substantial error exists in either the current data set or the version that was used prior to the mid-2000s, and numerous studies that have relied on these observations should be reexamined to determine the sensitivity of their results to this change in the data set. Furthermore, a number of recent studies have investigated physical mechanisms for the observed expansion of the Antarctic sea ice cover. The results of this analysis raise the possibility that much of this expansion may be a spurious artifact of an error in the processing of the satellite observations.

    It looks like, for sure, you can’t say that Antarctic sea ice is expanding or contracting in its annual cycle. It also looks like the evidence suggests it is probably not expanding at all.

    So, science, in its self correcting way, has thrown a wet blanket … a warm and wet blanket perhaps … on the idea that the Antarctic sea ice expansion disproves everything else we know about global warming. The Antarctic sea ice is not Galileo!