Monthly Archives: May 2009

When Your Field School Goes Into the Toilet …

Two years ago, I attended my best friend’s wedding. I made the cake. When I got married a year earlier, she was my best man. Last Sunday, a bunch of people were going on and on about my cakes (I make about one every two years but they are very famous and frightfully expensive) and this reminded me of her and the amazing times we’ve had and toilets in Japan.

Let me explain.

Read the rest at Quiche Moraine Dot Com

New Creationist Videos Being Produced in Area High School

This just in:

Dear Greg,

We are excited about our new public service campaign and it should be fully implemented within a month. Here’s the scoop:

This Thursday, May 28th, we will be at a local high school to
tape 3 presentations that will cover the following topics:

  • – Fossil Evidence
  • – The Truth about Genetics and Evolution
  • – How Does Evolution Supposedly Work?

Because most students respond better to interactive forms of learning, we have decided to offer free downloads of these videos as well as the supporting documentation for each of them.

Depending on future funding, we will be adding more and more videos and we will also be doing weekly webcam updates that will offer you the most recent scientific research. It’s coming forward fast and furious and it’s ALL goods news for us!

Please pray that I would have a Godly countenance and that God gives me wisdom and clarity for each word that is spoken.

We will send out an email when the uploads are available and thank you so much for your past and present prayers. It’s a fierce battle and I would be lost without them.

In Christ,

Julie Haberle
Who Is Your Creator

Church of Scientology On Trial for Fraud

France’s Church of Scientology today went on trial on charges of organised fraud in a case that could lead to the nationwide dissolution of the controversial organisation.

The Church’s “celebrity centre” spiritual association and its Scientology Freedom Space bookshop in Paris stand accused of targeting vulnerable people for commercial gain.

Six leading members, including the celebrity centre’s director, Alain Rosenberg, also face charges of illegally distributing pharmaceuticals.

source

Oldest Evidence of Leprosy Found in India

ResearchBlogging.orgIt is funny how people play with history. If we talk about an important “first” that is viewed in a positive light … the origin of beer for instance … the slightest evidence will be used by the people of a given region to claim primacy. Also, since Africa almost always gets the shaft in this regard, all else being equal, an early African occurrence of something good will be assumed as not definitive, but vague evidence of the non-African first occurrence will be taken more seriously. Seriously.

Now, we have an important finding with the opposite effect: Whence did Leprosy first come? For some time, the main contenders have been South Asia and East Africa for (although that is based on a fairly weak argument). Now there is evidence of the earliest Leprosy being form South Asia. That in and of itself is interesting and the paper just out moments ago in PLoS is important. But what I fund funny (not in the “ha ha” funny way exactly) is that despite the recent shoring up of the Asian Origin model for Leprosy, the concususion seems to be that all that is lacking to support the African Origin for this desease … being treated here as though it was a leper … is, well, actual evidence. And in the absence of evidence, we’ll just pick the African Origin.

But never mind that. I’ll jump back on my high horse regarding the Anti-African Bias later. For now, let’s look at the evidence being reported in this new paper.

Leprosy is caused by Mycobacterium leprae and is one of those diseases that paleopathologists really love because it produces traces visible on bone. Leprosy is found in armadillos and can be induced in some rodents and primates, and occurs naturally (or so it is thought) in Cercocebus atys, so there are reasonable animal models (for the bone traces) and it has been around long enough that it is probably safe to say that we more or less know it when we see it. (N.B.: The paper at hand does not recognize the Mangabey connection, which is either a lack on the part of the authors or on my part, so let’s leave this connection as subject to revision.) You know of leprosy because of its significant social stigma and all the cultural trappings that go a long with that unnecessary and ethically questionable approach to this disease. Likely, that social stigma relates to the appearance of leprosy in the written record, where previously it was well documented and accepted by historians back to about 2,600 years ago. The present find seems to allow the interpretation of writing in the Sanskrit Atharva Veda as being about leprosy instead of some other disease.

It had previously been reported that Mycobacterium originated in Africa during the Late Pleistocene and spreading elsewhere after 40,000 b.p. At the same time, it was suggested that the same genetic analysis evinced a Late Holocene origin of the disease in. The present paper reports the observation of leprosy in skeletal material from around 2000 B.C. in Rajasthan, India, at the site of Balathal. Balathal was a large agrarian settlement peripheral to the Harappan (Indus) Civilization.

From a press release for this paper:

The presence of leprosy in India toward the end of this period indicates that M. leprae existed in South Asia at least 4000 years ago. This suggests that there may be some validity to Pinhasi and colleagues hypothesis that the disease spread between Africa and Asia during a period of incipient urbanization, increasing population density, and regular inter-continental trade networks. Dr. Robbins is currently attempting to recover ancient DNA from the skeleton to determine if the strain of M. leprae infecting the individual from Balathal is similar to strains common in Africa, Asia and Europe today. If it is successful, this work could shed additional light on the origin and transmission routes of this disease.

The presence of leprosy at Balathal 4000 years ago also supports translations of the Eber’s papyrus in Egypt and a Sanskrit text in India (the Atharva Veda) that refer to the disease as early as 1550 B.C. The Atharva Veda is a set of Sanskrit hymns devoted to describing health problems, their causes and treatments available in ancient India. Translations of leprosy have been questioned because it is difficult to perform a differential diagnosis on descriptions in such ancient texts particularly since diagnosis was not why the conditions were being described. The evidence from Balathal indicates that it is possible that the authors were describing leprosy as the disease was present in the subcontinent in prehistoric times.

It is possible that there are alternative interpretations of the bone evidence used to infer leprosy, but future DNA study may rule those alternatives out. At the moment, however, it is a reasonable interpretation given the fairly blatant way in which leprosy is manifest in human bones.

Continue reading Oldest Evidence of Leprosy Found in India

Fallen Warriors

One of the things that struck me in travels through Scotland and the Canadian Maritimes was the monument in every town. Most of them were tiny, just a handful of names from each war-not because few died, but because the town was that small. The memorial at Edinburgh Castle, on the other hand, is of a scale and a simplistic majesty that imposes awe, a trick more church designers would like to have up their sleeves, I imagine.

Whatever the size, most memorials are central and public and impossible to overlook. That isn’t something we do well here.

Read the rest here at Quiche Moraine

An important role for junk DNA????

Junk DNA is like bigfoot. If a zoologist says something like “Hmmm… it would be cool to find bigfoot” all the other zoologists jump on him or her, drag the poor sap into the alleyway, toss on a blanket, and beat the scientist with rubber hoses until the movement stops. Same with junk DNA. If you mention that junk DNA may have a use or a role or something …. INTO THE ALLY WITH YOU!!!

The difference is, there is no bigfoot, but there may be some interesting stuff happening in the so called junk DNA.

Part of the problem is in what we call “junk.” If it does something, it isn’t junk. So, for instance, there are genes where a string of codons code for a string of amino acids. But in order for that to happen, other parts of the DNA have to be involved … parts that are not the codons coding for the amino acids that will become part of the protein. That is obiovusly not “junk” but back a few years before these bits of DNA were understood, that was “junk.” You cans see the problem.

All of which is a long run-up to a press report from Princeton talking about a possible role for junk DNA. I’ll let the Princeton press report team speak for themselves, and then I’ll enjoy reading your comments:

To comment on this post, please visit this open thread on my old blogs. The commenting system on this blog is currently broken. Sorry for the inconvenience.
Continue reading An important role for junk DNA????

The Chemical Industry: Without it, you would all die of terrorism!!!!

You have noticed, no doubt, that the latest and most common banner ads on Scienceblogs are for Americanchemistry.com, a blogospheric entity representing a handful of Chemistry special interest organizations. (“Without chemicals, life itself would be impossible.” and all that.) Which is fine, who cares? But what I want to draw your attention to is the ubiquitous use of the imagery of first responders in those ads. The message is obvious: Without chemicals, first responding itself would be impossible” which equals “Without the American Chemistry Industry, Osama bin Laden will eat your next born” or words to that effect.

To be fair, the same ad uses other images as well, like the astronaut-looking that I always assume is on his way into a chemical plant to clean up some disaster. In fact, I imagine the first responders as on their way from a chemical fire and cleanup site (they always look haggard like they just got off duty) and I imagine them going home that night, suddenly feeling ill, retching for a while, and dying of exposure to some …. chemical.

So the ads really aren’t working for me.

But that is not why I bring them up. I bring them up because I think the use of first responders as icons that are intended to make us like something is interesting, and part of a post 9/11 trend. Remember right after 911? When the word “first responders” was actually first heard in a lot of communities, and first responders were almost deified, or at least, demi-deified? They were readily allowed to desecrate the American Flag by draping them all over their vehicles and in some cases their own soot covered uniforms, they were on talk shows, they probably even got raises. Well, probably not raises. Anyway you do remember that.

I’ve noticed as well that first responders have taken a different tact in their field operations lately. I do enough highway driving to have a sense of this; I think first responders at accident scenes are taking up more space (closing more lanes) and taking up more time (having their post-disaster cup of coffee, etc. while the barriers are still up) at accident scenes.

I sense that they are strutting. And I find that annoying, if it is true.

Now, don’t get me wrong. Some of my best friends are first responders. And I have tremendous respect for what they do, and I feel that they are worthy of honor in our society. But let’s also remember, on this memorial day weekend, that first responders occasionally gun down innocent people, hog the donuts, and run one of the more misogynist, sexist operations in our society.

So as we remember our first responders — police, fire fighters, EMTs — lets also remember that they really are not demigods. Keep the safety locked and stop excluding women, don’t strut on the highway, and so on. And when you have to go to that great chemical spill down by the tanks next to the river … remember:

Chemistry … is essential to living.

To comment on this post, please visit this open thread on my old blogs. The commenting system on this blog is currently broken. Sorry for the inconvenience.

Yes, my comments are borked

Something is wrong with my site. Comments appear to be totally screwed up. This situation started on Friday, and I informed Scienceblogs Central of this. Since then I’ve been off the internet, wandering through the wilderness in the Great American Southwest. The tech people are aware of this, but I have not heard any details of when it may be fixed.

My posts are still coming out as scheduled, apparently, but comments go into the Twilight Zone. Sorry about that.

I have a few suggestions: Comment over here, on my old blog:

gregladen.com

or

Just don’t comment for a while

and

Seriously think about never trying to use Movable Type as your blogging platform. I’ve seen far more strange problems like this with Movable Type than I have seen with WordPress. WordPress rules.

Thank you very much

Greg

New Global Warming Predictions: Bad news and really bad news.

ResearchBlogging.orgOne item is just published in the Journal of Climate. Simply put, the use of some very sophisticated and probably quite trustworthy models suggests that extratropical cyclones (so this means winter storms and such, mainly) will have a good deal more precipitation in them.

In the model …

… There is a small reduction in the number of cyclones but no significant changes in the extremes of wind and vorticity in both hemispheres. … The largest changes are in the total precipitation, where a significant increase is seen. Cumulative precipitation along the tracks of the cyclones increases by some 11% per track … while the extreme precipitation is close to … (some 27%).

In another study not available to me but coming out in the same journal in a few days, the overall effects of climate change are predicted to be much worse than previously thought.

This is based on MIT’s Integrated Global Systems Model, which is a computer simulation of both global economic activity and climatic systems. This mega-simulation was run 400 times using slight variations in input parameters. According to a press release:

The new projections… indicate a median probability of surface warming of 5.2 degrees Celsius by 2100, with a 90% probability range of 3.5 to 7.4 degrees. This can be compared to a median projected increase in the [previous major study, conducted in] 2003 … of just 2.4 degrees. The difference is caused by several factors rather than any single big change. Among these are improved economic modeling and newer economic data showing less chance of low emissions than had been projected in the earlier scenarios. Other changes include accounting for the past masking of underlying warming by the cooling induced by 20th century volcanoes, and for emissions of soot, which can add to the warming effect. In addition, measurements of deep ocean temperature rises, which enable estimates of how fast heat and carbon dioxide are removed from the atmosphere and transferred to the ocean depths, imply lower transfer rates than previously estimated.

Continue reading New Global Warming Predictions: Bad news and really bad news.