Monthly Archives: August 2014

Calling It For Rebecca Otto

I’ve spoken to a lot of Minnesota DFLer’s (that’s what we call Democrats ’round these parts) about today’s Primary, especially in relation to the auditor’s race. Rebecca Otto, who, full disclosure, I don’t know at all but whose husband is a friend and colleague, is the incumbent. Rebecca has really put a shine on the Auditor’s office. I understand that the previous auditor, a Republican, pretty much sucked, so that might have made looking good a bit easier for Rebecca, but it can’t be true that all of the other auditors across the country also suck, and the various professional associations that deal with this sort of thing have awarded Rebecca with top level official accolades over and over. So, she is clearly about the best Auditor in the country, and in Minnesota, the best one to come along in a while.

Now, it turns out, that two or three of our Governors were formerly Auditors. I don’t know why Auditor would be a stepping stone to Governor, or even, if it really is. That might just be a fluke, like every president elected in a year that ends in zero getting killed or almost killed. The point is, it has become local political folklore that Auditor is a good jumping off point for Governor.

So, there’s this guy named Matt Entenza who has run for Governor before. He used to be in the State Legislature. Mostly though, his political career consists of spending huge piles of family money on running races that he loses. I’m pretty sure Matt wants to be be Governor, and he wants it so badly that he is virtually delusional about the prospects. Or, perhaps, he simply has a deep and unabiding disdain for Minnesota voters. He thought he could just spend a lot of his family money on a campaign and unseat a well liked and widely respected incumbent.

In Minnesota, we use the Native American system of choosing our candidates by party to run in the general election. No one fully understand the process but it involves a lot of standing around in a special room that you need permission to be in. People join in groups and hold up symbols of their political beliefs and the candidates they support, then move between groups, sometimes combining groups. A Caucus Chief occasionally tells all the people in this or that group that they must disband, and those individuals then join other groups. If a group gets big enough and they are fast enough they can form two groups. The exact number of groups that are formed and their exact configuration can determine who ultimately is chosen by the Caucus. At various points the Caucus is frozen, and tough looking guys working for the Caucus Chief make sure no one crosses certain lines that are sometimes marked on the floor with Duct Tape. It might be unfrozen and refrozen a couple of times, but eventually the Caucus Chief calls an end to it and each of the clusters of people elect a certain number of representatives who are supposed to vote a certain way on the first ballot at a district convention. But no one knows who these people are because the Caucus Chief works for a secret society that maintains all the rules of the caucus system, and runs it, but does not provide any information from it, so the supporters of the various candidates have to rush to one end of the room where those elected by the Caucus groups are required to go to state their name and how they will vote to a group of very old people who can’t hear a thing. The friends of the candidates try to glean the names of the elected ones, and the elected ones often try to interfere with this process, which seems ridiculous because the first thing you get if you are elected is the candidate buys you a cup of coffee later in the week at Caribou or Starbucks.

Amazingly, this system works rather well, and eventually produces a set of “endorsed” candidates. Rebecca Otto, who is a successful well liked and widely respected incumbent, was endorsed by the party. Then moments before a special deadline, after the endorsement, this guy Matt Entenza, who really wants to be Governor, filed to run. So there was a primary challenge within the party.

Entenza lied and lied and lied. He lied about himself, he lied about Rebecca, he lied about what the Auditor’s job is, he lied about what he would do if elected (we know he lied because he’s not an idiot and he made claims that he would do things that the Auditor simply does not do).

So the Primary was today. They are still counting votes as I write this. And, as I said, I have spoken, especially today, to a lot of DFLer’s (Minnesota Democrats.)

Most of them strongly support Rebecca Otto and are annoyed at Entenza. I spoke today to one person who said he’d vote for Entenza, and I think maybe his wife was to. I spoke to an Entenza staffer — a paid employee of Matt Entenza’s campaign — who quit a couple of weeks ago “… because Entenza lied to me, he lied to us, we all told him to go to hell …” who is voting for Rebecca.

Last time I looked 17% of the vote was counted and Otto was ahead by over 80%. I’m calling it for Otto.

#Ebola UPDATE-Rate Of New Cases Rises, Note to Laurie Garrett, is there a case in South Africa?

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h2>New for August 16th

I will try to keep new information and updates in the same post for a while until I have a chance to do a comprehensive re-overview of everything.

The 16 August update from WHO indicates a large uptick in the daily number of cases. Over the two days of the most recent reporting period an average of 76 cases per day have been identified as confirmed, probable, or suspect, with a total of 76 deaths over that period of time.

Good news is that the situation in Nigeria doesn’t seem to be developing. There were no new cases over the this reporting period, and one death. The last new cases in Nigeria were reported on August 6th for the period between August 2 and august 4. So over ten days without a new case in Nigeria probably means that the “outbreak” is burned out.

Meanwhile, there is another suspected/possible case in another country. This has happened a number of times, where a suspected Ebola case is identified. Hong Kong, the Philippines, the US, etc. have had these, and of all of the cases none have been shown to be Ebola except possibly one, and that is in Saudi Arabia did not work out either, the Saudi case was not Ebola. The new possible case is in South Africa.

The updated graph showing the increase in daily cases is inserted below as before.

And now, a personal note to Laurie Garrett. Laurie wrote this post, and I wanted to comment on it but the commenting system there did not work for me. (Perhaps one has to be subscriber.)

Laurie,

I love you work. It was your book, based on your Thesis at the Kennedy School, that got me interested in tropical diseases. Well, that and at the same time going to the tropics, running a makeshift health clinic there, and getting some of the diseases. I often point people to your earlier writing on influenza to find out about the true pre-Wakefield anti-vax movement, to see how the US handling of Swine Flu made it very difficult if not impossible to have a sensible national vaccine program that was not byzantium (which is what we have now)

But I think your article on not being scared enough about Ebola has some problems. I agree that this outbreak has not been taken seriously. I nave noted in my own writing that WHO and CDC, even, are coddling the public about some of this. I also noted, which I don’t think you did, that Ebola “in Africa” is Ebola in America already. One of my neighbors died of Ebola, and one of his relatives in Liberia did as well, and some of my other neighbors lost relatives, I’ve heard. This is because Liberians and other Africans live in communities with one foot in Africa and one foot here. Those who died of Ebola did so in West Africa, but they are still neighbors who live here part time or African-based relatives of neighbors who live here full or part time.

So yes, for many reasons, be concerned.

Here’s where I don’t agree with you.

First, while the cures and vaccines are truly not deployed as you point out, you are more negative than necessary. In fact you are hyperskeptical. A common phrase in hyperskepticism is “there is not a shred of evidence of…” Well, there is not a shred of evidence that my four year old is upstairs eating a peanut butter and jelly sandwich instead of the nice dinner I made my family, but that does not mean it is anywhere near impossible. In fact, he’s probably eating a peanut butter and jelly sandwich, though I can produce not a shred of evidence from here in my basement that he is. There is in fact good scientific reasons to think that the cures that have been brought to the brink of testing are likely to work, and Ebola is not like Malaria (not even close) or even viral cousins such as Influenza when it comes to vaccine prospects. The prospects are good, if only someone would work on them.

Next problem: No, Saudi has not Ebola. No, there have not been a number of actual, non-panic-based cases of Ebola outside of the affected area other than my neighbor and those he infected, in Nigeria.

Next:No, Nigeria does not actually seem to be having an outbreak. No new cases in ten days is good news. It may be over there.

We’ll see about South Africa.

But yes, I do agree with you on two other points. First, all of the health care molecules have moved to one corner of the proverbial room suffocating other health care efforts in the affected countries. This is a big deal. Second, yes, it really is possible despite major media and major organizations insisting it is highly unlikely for this outbreak to seed an outbreak pretty much anywhere in the world. Not that likely. But I won’t say that there is not a shred of evidence that it could happen (citing that every single case outside the zone for which confirmation was completed has not worked out). I’ll just say that we have no freakin’ clue how likely it is, but it is not zero and the consequences would be dire.

So, I don’t want to tone-troll your article. You went for breathless, and you got to breathless, and that’s probably a good choice, you have the credibility to pull it off and people need to hear much of what you said. But no, Ebola is not leaking out of the zone now, and yes, there is better hope I think for the existing (as in on the table, not deployed or even tested) cures and vaccines (and by the way, the “ethical considerations” are a red herring, that is true for all drug development, but seems only mentioned frequently with respect to Ebola).

End of rant. Again, love your work.

Cheers,

Greg

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h2>End of August 16th update

Probably.

Yesterday I made the optimistic statement that the number of new cases a day may be leveling off, as for two reporting periods in a row, representing five days, the new cases were about half of the previous reporting period, normalized to a per-day estimate.

Today’s report from WHO covers two days and indicates 128 more cases, so the number of new cases per day for the latest known period is actually higher than at any previous time during this outbreak. Pursuant to this I’ve replaced the pertinent graphic below. I was optimistic, but I also provided caveats. The caveats won.

Is the current Ebola Outbreak subsiding?

At some point, the Ebola Outbreak in West Africa has to slow down and stop. The disease is too hot to not burn itself out, and it has no human reservoir. Ebola accidentally broke into the human population earlier this year or late last year, probably once (see below), and despite the regular increase in daily reported cases over the last several weeks, the disease must at some point begin to level off.

The latest two updates from WHO indicate that the Ebola outbreak may be leveling off now, tough it is too early to be certain. The following graph shows the approximate number of new cases reported per day by WHO. This is calculated by taking the number of new cases in a report and dividing by the number of days covered by that report. A given estimate of daily new cases may be quite off for a number of reasons. First, even if there is a long term upward or downward trend, there is likely to be a lot of randomness in the data. Second, this is the number of cases reported in that time period, not the number of cases that manifest. It is likely that some cases manifest during the reporting period are not recorded yet, and cases manifest for the prior reporting period are included in the current reporting period. Over several reporting periods this would, obviously, even out, but a given number of days in a reporting period may be off by a day or so. So, these caveats mean that we should be very cautious in interpreting this graph.

NEWER GRAPH:
Ebola_2014_outbreak_cases_per_day_Aug_15Update

Note that what appears to have been a fairly steady increase in number of cases, with about the same number of ups as downs but with the ups adding to a higher sum, since late June, has been followed by two reporting periods with decreases in numbers of new cases. Note also, however, that in late May the number of new cases per day went up fairly quickly then dropped again before a new steady rise occurred. If we use a moving average of 3 data points, which would combine sets of 2-4 days each to obtain something close to a 10 day effective moving average, the upward trend is more evident than any recent downward trend:

Screen Shot 2014-08-12 at 2.44.43 PM

The next two WHO reports may clarify this trend.

Mortality Rate Is Decreasing

The mortality rate for this outbreak continues to decrease slightly, which is probably a result of increase effectiveness of the response to the outbreak, despite all the news stories about how things seem out of control.

EbolaOutbreak_2014_MortalityRate_Aug_11_update

The current mortality rate is dropping below 55% given confirmed, probable, and suspected cases and deaths. But the rate varies across different categories. The outbreak-long rate for all cases and all deaths is currently 55%, and looking only at confirmed cases and deaths, it is 56%. The mortality rate for all previous African Ebola outbreaks, taking total reported cases and total reported deaths, is 66%.

This is the largest outbreak ever, and then some

Currently there are over 1,800 confirmed, probable, or suspected cases reported in the West African outbreak, and 1176 confirmed cases. Using just the confirmed cases, to be conservative, the present outbreak is 277% larger than the next largest outbreak, which was in 2000 in the Gulu, Masindi, and Mbarara districts of Uganda, with 425 cases. The total number of confirmed cases for the present outbreak represents about 49% of all of the prior African Ebola outbreaks combined.

Patient Zero Identified?

Patient Zero, who we assume is the person to whom the disease jumped from its usual animal reservoir, directly or indirectly, may have been a toddler in Guinea. The two year old child died in December 2013, which is quite a bit before this outbreak came on everyone’s radar screen, and after which it was fairly low level for a while.

I’ve long maintained that a likely way for Ebola to get into other species is from ground dwelling mammals, such as chimps, gorillas, or forest antelopes and duikers, ingesting or mouthing the discarded wadges of fruit previously handled by Ebola-carrying fruit bats. From such non-human animals the Ebola would then enter human populations from people butchering bush meat. In this case though, I wonder if the toddler may have been a direct recipient, picking up and mouthing fruit-bat spit covered fragments of fruit found on the ground. A parent’s worse nightmare, apocalypse style, to be sure.

The Famous Untested Drug

There has been a bit of complaining about my use of the term “drug” or “cure” for ZMapp, a drug that was developed to fight Ebola but not used until just now. Some have said it is not a drug until it is tested and deployed, and until then, it is a possible cure and not a real cure.

This is wrong. A “possible cure” is when you take an existing compound or substance, apply it to a pathogen or an affected animal model, and get a hopeful result. This possible cure can then be further developed to make, most of the time, nothing because these things generally don’t work out. Or, to make a cure. Which can then be tested.

In the case of the treatment now given to three patients (two survived one died), the cure was developed for Ebola based on some pretty solid science and prior experience with similar type cures working for similar diseases, successfully, in the past. The cure was not in “hopeful” or “possible” phase, but rather in developed but untested phase. The WHO convened an emergency panel of experts, yesterday, which decided that the cure should be used in the field under certain circumstances. So now there is an untested but developed cure for Ebola being deployed in West Africa. The WHO discussion on this is here.

Minnesotans: Today is primary day

Don’t forget to go and vote in today’s primary!

I for one will be voting for Rebecca Otto for auditor. She is nationally recognized as one of the best Auditors ever in the country. Rebecca Otto is the DFL endorsed candidate. The person running against her in the primary, Matt Entenza, has run a highly questionable and dishonest campaign. See this for more details.

Reviews of Nicholas Wade's "A Troublesome Inheritance"

A list of reviews of Nicholas Wade’s book “A Troublesome Inheritance,” mainly by anthropologists and others who have investigated issues surrounding the concept of “race” in humans.

Bethune, Brian: Inheritance battles

Daniels, Anthony: Genetic disorder

Dobbs, David: The Fault in Our DNA

Fuentes, Augustín: The Troublesome Ignorance of Nicholas Wade

Geneticists, Lotsofthem: An Open Letter

Goodman, Alan: A Troublesome Racial Smog

Johnson, Eric Michael: On the Origin of White Power

Laden, Greg: A Troubling Tome

Marks, Jonathan: The Genes Made Us Do It

Marks, Jonathan: Review of A Troublesome Inheritance

Myers, PZ: The hbd delusion

O, Josyln (AAA): Is Cultural Anthropology Really Disembodied?

Orr, Allen H.: Stretch Genes

Raff, Jennifer: Nicholas Wade and race: building a scientific façade

Steadman, Ian: “Jews are adapted to capitalism”, and other nonsenses of the new scientific racism

Terrell, John Edward: A Troublesome Ghost

Yoder, Jeremy: Cluster-struck

Yoder, Jeremy: How A Troublesome Inheritance gets human genetics wrong

Arctic Emergency: Scientists Speak

Lots to talk about here:

Published on Aug 1, 2014
Arctic Emergency: Scientists Speak On Melting Ice and Global Impacts (1080p HD)

This film brings you the voices of climate scientists – in their own words.

Rising temperatures in the Arctic are contributing the melting sea ice, thawing permafrost, and destabilization of a system that has been called “Earth’s Air Conditioner”.

Global warming is here and is impacting weather patterns, natural systems, and human life around the world – and the Arctic is central to these impacts.
—————————————-­———
Scientists featured in the film include:

– Jennifer Francis, PhD. Atmospheric Sciences
Institute of Marine and Coastal Sciences, Rutgers University.

– Ron Prinn, PhD. Chemistry
TEPCO Professor of Atmospheric Science, Massachusetts Institute of Technology.

– Natalia Shakhova, PhD. Marine Geology
International Arctic Research Center, University of Alaska-Fairbanks.

– Kevin Schaefer, PhD.
Research Scientist, National Snow and Ice Data Center.

– Stephen J. Vavrus, PhD. Atmospheric Sciences
Center for Climatic Research, University of Wisconsin-Madison

– Nikita Zimov, Northeast Science Station, Russian Academy of Sciences.

– Jorien Vonk, PhD. Applied Environmental Sciences
Faculty of Geosciences, Utrecht University

– Jeff Masters, PhD. Meteorology
Director, Weather Underground

Return to Fukushima

Three years after the disaster at Fukushima, science correspondent Miles O’Brien returned to the Daiichi nuclear plant for an exclusive look at the site. Follow Miles on a never-before-seen tour of Daiichi’s sister site, Fukushima Daini, which narrowly avoided a meltdown during the Tohoku earthquake. As the country debates turning its reactors back on, Miles asks: will Japan have a nuclear future?

#Ebola Outbreak: Rate of new cases remains high, Nigeria may now have outbreak

It is probably safe to say that Nigeria now has an outbreak, as a handful of cases contracted in country seem to have been reported, though it is too early to be sure this will stick. Hopefully it won’t.

There is also one suspected case, a death, in Saudi Arabia, of someone who would have caught it in Liberia.

The number of new cases per unit time seems to have increased, or at least, stayed high as it has been for the last several days. The following chart based on WHO data shows the cumulative number of cases and deaths, including probable, suspected, and confirmed, as per WHO reports which come out at irregular intervals but generally every few days, though today’s report (August 6th). The mortality rate continues to hover between 50 and 60% (the drop at the end of that line is probably an artifact of the rate of new cases added and does not mean a drop in mortality rate, most likely)>

Ebola_2014_Outbreak_Aug_6_update

See this post for a more detailed look at the dat up through the previous report, where there is a discussion of some of the nuances.


More posts on Ebola:

<li><a href="http://scienceblogs.com/gregladen/2014/08/04/there-is-a-cure-for-ebola-we-have-it-we-just-dont-let-anyone-use-it/">There is a cure for Ebola, we have it, we just don’t let anyone use it.</a>

<li><a href="http://scienceblogs.com/gregladen/2014/08/04/ebola-outbreak-continues-probably-worsens-perhaps-spreads/">Ebola Outbreak Continues, Probably Worsens, Perhaps Spreads</a></li>
  • Ebola Perspective: Risks of spread to the US and elsewhere
  • <li><a href="http://scienceblogs.com/gregladen/2014/07/27/ebola-outbreak-in-west-africa-some-basic-information/">Ebola Outbreak in West Africa: Some basic information (Updated)</a></li>
    

    Mann Vs. National Review: National Review Floundering

    The National Review is a political magazine, and Mark Steyn, I think, writes for them (I really don’t keep track). A while back Steyn and/or the National Review made some seemingly very defamatory statements about Michael Mann, the climate scientist. Career-damaging really icky accusations of fraud and such. They were bogus accusations, but they were also not just trollish yammering of the type we see all the time from the science denialist gaggle. So, Mann sued them.

    NationalReviewHyperboleMemeI prefer the Law and Order version of law. Something happens on Monday, on Tuesday everything is confusing, on Wednesday there is a car chase or something, on Thursday everyone is in court and on Friday the whole maneno is done with and everyone is back to eating donuts. Real legal stuff drags on forever. If you want to catch up, here are a few blog posts and other items that might help. (That was a search using the Climate Science Search Engine, which is on the right side bar of my blog!)

    Anyway, there is a new development. National Review has filed a long and boring legal document that appears to be some kind of whinging about how the case against them should go away. Eli Rabbit has made two comments about it that I agree with. First, he notes that the document states that the prior yammering by National Review is not officially “malice” because they really believe the things they say. But, in the same document, they claim that “Read in context, Steyn’s commentary was protected rhetorical hyperbole, not a literal accusation of fraud or data falsification.” See meme.

    The second point also stuck out as a sore thumb when I looked at it, and it is so obvious that I assumed I was reading the legal document incorrectly. But Eli confirms. From the legal document:

    …critics have argued that the hockey stick is misleading because it splices together two different types of data without highlighting the change: For roughly the first nine centuries after the year 1000 A.D., the graph shows temperature levels that have been inferred solely from tree-ring samples and other “proxy” data. But from about 1900 onward, the graph relies on readings from modern instruments such as thermometers.

    I’m pretty sure the technical legal term for this is taurus craps puris*. The hockey stick graph in its original form and most early incarnations has color coding or other appropriate line style differences to distinguish between the records. Some people have taken both the hockey stick graph and other similar graphics and merged the data into a single squiggle for presentation purposes, an acceptable if not always wise method. The National Review legal document also makes mention of shifting between proxies and instrumental data. They suggest that a broken instrumental record should have been used instead of simple temperature measurements with thermometers and stuff. This harks back to the time the climate science denialists stole a bunch of scientists’ email and made stuff up about it (a complicated story but one you can read about in detail in Mann’s book).

    This filing by the National Review is a lame defense against a very well argued and appropriate law suit. I’m sure this won’t last until Wednesday in court. (Law and Order time.) Not only are their claims wrong, but they have been known to be long for a very long time.


    *Translates roughly as Complete and Utter Bullshit.

    Ebola Outbreak Continues, Probably Worsens, Perhaps Spreads

    The WHO came out with a new report today with the latest figures on Ebola. These numbers take us to the end of July. There are two bits of bad news.

    First, the number of new cases is high, as high as any prior report (but keep in mind that these reports cover uneven time periods). There are 163 new cases and 61 new deaths, bringing the total number of confirmed cases and deaths to 1009 and 574, with the total number of confirmed, probable, and suspected to 1,603 cases and 887 deaths.

    Second, Nigeria is now in the mix. There was previously only one case in Nigeria, a Liberian man who contracted Ebola in Liberia and died in Nigeria. But now there are three probable new cases in Nigeria and one probable Death (none confirmed). According to WHO, of the Nigerian cases, “…one is a health-care worker and one is a Nigerian who travelled to Guinea — and a suspected case in a nurse.” I’m not sure if four cases (if confirmed) is an outbreak yet. If all the cases have quirky explanations having to do with other countries, than this not be anything new. But this could also be the beginning of the spread of the disease into Nigeria.

    Here’s a graphic of the cumulative number of caeses by country (not counting Nigeria) and the total so far. These are all cases (confirmed, probable, suspected). You will notice that Sierra Leone is contributing the largest number of cases, but Liberia is contributing the strongest uptick in what seems to be an increase in rate of new cases (more on that below).

    Ebola2014_Aug4_update_cases_by_country

    This graphic shows the number of cases over time and the number of deaths over time (totals). Note that the gap between the two is widening, suggesting a lowering of the mortality rate.

    Ebola_2014_total_cases_and_deaths_Aug4_update

    To try to get a better idea of mortality rate over time, here’s a graph of the an estimate mortality rate based on the total number of cases and the total number of deaths for each of the WHO reports (which come out every few days) over time. There is no sense in calculating a simple correlation coefficient or R-squared value for these data because each data point is based on the adjoining data point plus or minus (they are not independent) but one suspects a proper time series analysis would suggest a decrease.

    Ebola_2014_mortality_rate_over_time_per_report_August_4_update

    Keep in mind that as the number of cases or deaths shifts along the confirmed-probable-suspected axis, the morality rate can change quite a bit. One might expect that the least certain category would have the lowest mortality rate because one is more likely to incorrectly assign a patient to having the illness than one is to attribute a death to the disease. Here’s the behavior of mortality rate across the different categories of available data. Note that the rate for “new” is probably going to be biased downwards if the rate of new cases is going up (because the number of people who have not died yet, but will, is greater than if the rate is going down); that 37% figure, therefore, is nothing to get excited about. Also keep in mind that “Total” is a combination of the other three categories. Given the vagueness of some of the data, one could say that a good estimate of mortality is 55%, but a large number of cases have been added in the last several days, so it might be better to say that the mortality rate in this outbreak is at least 55%.

    Ebola_2014_Mortalit_Rate_Across_Categories_Aug_4_update

    It seems that the number of new cases is going up but this is hard to count. The WHO reports cover different time periods, and I’ll wager that even within that constraint the data are a bit funky given the on the ground situation. Over the large scale of time it is clear that the number of new cases is rising. This graph shows the number of new cases per month, but keep in mind that the dates of the various reports do not match the ends of the months cleanly so there is room for error her. These are all cases.

    Ebola_2014_New_Cases_Per_Month_Aug_4_Update

    Since the rate of infection can go up or down over a matter of days, or a least, more rapidly than would be reflected in a month by month accounting, here’s the same data by half-month:

    Ebola_2014_New_Cases_Per_Half_Month_Aug_4Update

    And, because that does not capture important detail here’s the data again by WHO report, keeping in mind that the length of time covered by each report varies.
    Ebola_2014_Rate_New_Cases_Per_Report_Aug_4_update

    Actual epidemiologists use much more sophisticated methods for analyzing this sort of data, but this should give you the idea that while the rate of new cases varies a lot from report to report, there is a general upward trend in the number of new cases.

    This Ebola outbreak is not going away soon, it seems.

    Other posts on Ebola:

    <li><a href="http://scienceblogs.com/gregladen/2014/08/04/there-is-a-cure-for-ebola-we-have-it-we-just-dont-let-anyone-use-it/">There is a cure for Ebola, we have it, we just don’t let anyone use it.</a>
    
    <li><a href="http://scienceblogs.com/gregladen/2014/08/04/ebola-outbreak-continues-probably-worsens-perhaps-spreads/">Ebola Outbreak Continues, Probably Worsens, Perhaps Spreads</a></li>
    
  • Ebola Perspective: Risks of spread to the US and elsewhere
  • <li><a href="http://scienceblogs.com/gregladen/2014/07/27/ebola-outbreak-in-west-africa-some-basic-information/">Ebola Outbreak in West Africa: Some basic information (Updated)</a></li>
    

    There is a cure for Ebola, we have it, we just don't let anyone use it.

    LATEST UPDATE HERE … new numbers just in from WHO, and they are bad.

    I had suspected this might be the case. Disease like Ebola are potentially easily cured using serum. Here’s the idea. Someone gets the disease and survives, and their body now produces products that give them an immunity. So, you take a bunch of their blood, clean it up as best you can, and inject the serum (the cleaned up blood, to oversimplify) with these immune products, in to a person with the disease. That stops the disease, at least some of the time. The early history of the discovery of many nasty viruses involves several stories like this, where a researcher or physician is infected, seemingly likely to die, and is given a serum and lives.

    The serum treatment is potentially very dangerous because it can include who knows what from the other person’s blood. But it is quite reasonable to suggest that we can make a product that is based on serum that is clean and effective. In this case, specific products were obtained from infected mice.

    And, apparently, there is such a thing, it is a secret, and it is reserved only for select individuals (because there probably isn’t much). Oh, and it is totally experimental and until now, never before tried on humans. From CNN:

    Three top secret, experimental vials stored at subzero temperatures were flown into Liberia last week in a last-ditch effort to save two American missionary workers who had contracted Ebola, according to a source familiar with details of the treatment.

    A representative from the National Institutes of Health contacted Samaritan’s Purse in Liberia and offered the experimental treatment, known as ZMapp, for the two patients, according to the source.

    According to company documents, four monkeys infected with Ebola survived after being given the therapy within 24 hours after infection. Two of four additional monkeys that started therapy within 48 hours after infection also survived. One monkey that was not treated died within five days of exposure to the virus.

    …In the monkeys, the experimental serum had been given within 48 hours of infection. Brantly didn’t receive it until he’d been sick for nine days.

    The medicine is a three-mouse monoclonal antibody, meaning that mice were exposed to fragments of the Ebola virus and then the antibodies generated within the mice’s blood were harvested to create the medicine. It works by preventing the virus from entering and infecting new cells.

    Brantly asked that Writebol be given the first dose because he was younger and he thought he had a better chance of fighting it, and she agreed. However, as the first vial was still thawing, Brantley’s condition took a sudden turn for the worse.

    Brantly began to deteriorate and developed labored breathing. He told his doctors, “I am going to die,” according to a source with firsthand knowledge of the situation.

    Knowing his dose was still frozen, Brantly asked if he could have Writebol’s now-thawed medication. It was brought to his room and administered through an IV. Within an hour of receiving the medication, Brantly’s condition was nearly reversed. His breathing improved; the rash over his trunk faded away. …

    Writebol also received a vial of the medication. Her response was not as remarkable, according to sources familiar with the treatment. However, doctors on Sunday administered Writebol a second dose of the medication, which resulted in significant improvement.

    This is an untested drug that is not available for general use. This has led to some argument of whether or not it can be called a “treatment” or a “cure” because it has not yet gone though the process of development, testing, and deployment. One could call it a “potential cure.” The key point, is, that it could be developed and implemented, and since the science of making an antibody basted treatment is well established, it is hard to understand why this has not happened. yet. I suggest that all it would take is deciding to spend the money and effort on developing it, rather than simply ignoring Ebola because it is not Malaria.

    If I was President Obama, I’d simply order the military to take this to the next step. The US Army has done as much research on Ebola as any other agency. It would be a simple matter to move a few budget items around and allow USAMRIID organize, using its own people and consultants, to move forward (because you know the present Congress is never going to authorize spending money on helping sick people in Africa, even though this is also very much about the United States.

    It is the right thing to do.

    How to talk to your uncle who thinks global warming is a hoax?

    So, you accept the science of climate change and global warming as legit. But you often encounter people, at family gatherings, on your Facebook page, on Twitter, at social events, etc. who don’t. Do you keep your mouth shut when someone says something clearly wrong that brings the science into question illegitimately? If you do, and others are listening, then one voice, a denialist voice, is influencing people. Probably better to say something.

    The problems is that the denialist schtick involves having a lot of different arguments, with absolutely no regard as to legimacy, against the science. You’ve heard of the Gish Gallop. You make an argument that seems to invalidate your opponent’s position, and it does not matter how well that argument is demolished, no problem, you just make another argument. This is sometimes what happens when you find yourself in these conversations. “But what about ….” is probably the most common retort to a counterargument to a denialist claim.

    I’m frequently asked what resources people can use to learn about the arguments, both the denialist arguments themselves and how to counter them. If I provide information on one resource, it is always skepticalscience.com. That web site is very nicely organized, it includes all of the denialist arguments (if you know of a denialist argument skepticalscience.com does not cover, let them know, or if you like, let me know and I’ll pass it on). The primers that address the arguments are often provided at multiple levels, so you can get the non-technical tl;dr, or you can go into the details.

    But, not every body relates to web sites. Sometimes you like to take a book to bed with you for the evening, or to the beach, or to some other place where you like to read, and just learn stuff. Or, while you will certainly find skepticalscience.com or other web sites (including my blog, I hope) useful, you may want to explore a few other perspectives, or other ways of saying things.

    Well, now there’s a book for that. “How to Change Minds about Our Changing Climate” is slightly misnamed. This book, by scientists Seth Darling and Douglas Sisterson, does not really go into the science of mind changing. But it does provide a litany of denialist claims and the scientific answer to them, in a way that you will find useful. You will not only learn the arguments but you will gain confidence in making the arguments at that family dinner or school board meeting or cocktail party.

    Seth Darling is a scientist at the Center for Nanoscale Materials, Argonne National Laboratory, and a fellow at the Institute for Molecular Engineering at the University of Chicago. Doug Sisterson is a senior manager at Argonne National Laboratory, US Department of Energy Atmospheric Radiation Measurement Climate Research Facility. They know the science and have done a very nice job putting the argument on paper (or eBook). From the publisher:

    One by one, the authors debunk all the most pernicious myths surrounding climate change and offer talking points that readers can use to do the same, in chapters such as “There is no consensus” and “There’s no link between warming and extreme weather.” In fact, there is consensus, and the time to take climate change seriously is well past. As Darling and Sisterson cogently explain, “We are poised to compress an amount of global warming that historically has occurred over the course of thousands of years into a single century”—and the menacing effects we’ve already seen only hint at what’s to come…

    You can get the book here.

    Also, do me a favor. If you get the book on Amazon and read it, please go to Amazon and leave an honest review. Anti science denialists like to swarm books on amazon with bogus awful reviews, and you can help counter that.

    ADDED: An important criticism of this book, that I agree with, is the authors’ use of the actual myths to be debunked as titles. This is not good communication strategy and is discussed, vis-a-vis this work HERE.

    While you are at it, check out Michael Mann’s book, The Hockey Stick and the Climate Wars: Dispatches from the Front Lines and, again, if you read that please consider giving an honest review on Amazon; Mann’s book is frequently attacked on that site.

    (Speaking of books being attacked, my book, which is a novel and not on climate change, is here. I got badly attacked by Mens Rights Activists who hate me because I’m against rape. The book isn’t even about that, but they are organized and have been in the habit of harassing me and other people who speak out for women’s rights.)

    In any case, you can also up vote reviews you like and down vote reviews you don’t like, on Amazon.

    Finally, a while back I put together a list of climate change related books, HERE. You might find that useful.

    Ebola Perspective: Risks of spread to the US and elsewhere

    LATEST UPDATE HERE

    It is true that this particular outbreak of Ebola has taken health officials somewhat by surprise. It is impossible to know, but I suspect that if you had asked a few ebola experts, a year ago, if there could be an epidemic that would spread across three or four countries, infect a couple thousand people, and last with no sign of letting up for a few months (that is the current situation, more or less), most would say no, probably not, though it is within the range of possibilities. Does the fact (assuming it is true) that this particular Ebola outbreak is unprecedented and kinda over the top even for an over the top disease like Ebola mean that there is something different about this Ebola or this outbreak? That is a question that may be on your mind.

    Another concern is the possibility that since this outbreak involves populations with more mobility including via aircraft than previous outbreaks that the Hollywood Scary Fiction scenario could happen. Here’s how that goes. Someone infected with Ebola, but not symptomatic, gets on a long plane flight, maybe with a few legs and layovers. They start to get sick on the first flight, and after changing planes twice and being very sick for the last leg, they get off the plane and collapse, are taken to a local hospital very far form the Ebola epidemic where no one is expecting Ebola, spend a little quality time in the waiting room, and are finally put in an in-patient unit in a room with two or three other people. Hundreds of people have been near this person. The patient threw up in the bathroom of each of the airplanes he was on, and later someone filled the sink in the same bathroom and used the water in the basin to wash his or her face. He drooled on his pillow while sleeping in his seat, and somehow the person next to him ended up with that pillow and slept on it for an hour. He threw up on some nurses and some orderlies had to clean up his diarrhea in the hospital a few times. And so on. By the end of all of this, a half dozen people are infected with Ebola, including a personal trainer, a grade school teacher, and four nurses. That’s just the first scene in the movie, long before the character played by Morgan Freeman is on the scene, and when the character played by Morgan Freeman shows up, you know things are getting serious.

    A variant of that concern is this: Two aid workers helping with the Ebola epidemic, Americans, catch Ebola and are very ill. It is decided to fly them back to the United States for treatment. This brings Ebola into the US, where it could spread to other people because, well, because Ebola! But is this a realistic concern or just a Hollywood studio’s wet dream?

    At this point in the epidemic we are seeing the usual bifurcation of reaction among the general public, sciency bloggers, and the press. On one had there is growing panic, people either being very scared, for real, or people or press outlets shopping fear on the market because it sells. On the other hand there is the stern corrective statement that all your fears are invalid, Ebola isn’t going to get out of hand, isn’t going to get to the US, there is nothing to worry about.

    At the same time there is a parallel and equally bifurcated rhetoric about the bigger picture, about dealing with Ebola as a public health problem. On one hand you have people asking for a vaccine, or some sort of cure, to address this thus far orphaned disease, because they are worried about it. On the other hand you have people noting that Malaria kills millions a year, and most years, Ebola kills no one, and when there is an outbreak, it only kills dozens or hundreds, except this last time which is still only many hundreds dead and the very low three figures sickened.

    Every one of the above mentioned concerns is valid and invalid at the same time, and every one of the reactions to the current Ebola crisis is both correct and incorrect at the same time. Let me explain.

    What is the meaning of the bigness and badness of the Ebola 2014 outbreak?

    There may be new things to learn about Ebola from this outbreak, but that won’t be until after the dust has settled and scientists have had a chance to look more closely at the data, and the virus, and everything else. But there does not seem to be anything new or unusual about the disease, and I don’t think there is any major difference in how the outbreak is being handled. But there are two differences from earlier outbreaks, one of which is certainly relevant to the large size of this event, the other perhaps important but as yet unclear.

    <li>Most, really all, prior outbreaks occurred in areas where the affected population was relatively thinly scattered on the landscape and the movement of people in and out of the area was minimal and slow. This outbreak is happening where there are much larger concentrations of population and a lot of movement of people.  This has simply upped the chance of transmission in close quarters (higher density) and made for opportunities for spread to previously unaffected settlements.</li>
    
    
    <li>There has been resistance to health workers coming into some villages.  This story is spreading around as though it was a major thing, that large areas were becoming dangerous or difficult for health workers to enter or work in.  We need to be cautious in drawing conclusions from the news.  It is very easy for westerners to slip into blaming the natives for their own difficulties and contrasting native ignorance with Great White Smartness.  There may well be areas where this is happening or important but until there is some actual unbiased carefully collected and evaluated information on this, please don't draw conclusions.  If you hear about something that looks like a great story, there is a good chance that it is a great story.  Emphasis on "story." </li>
    

    This particular Ebola outbreak is really like all the others, but jumbo size.

    Could sick aid workers being brought to the US spread the disease here?

    No.

    You can stand in a room with a person infected with Ebola ten feet across the room from you, and stand there for hours, without a mask, and you will not, can not, get Ebola. It simply isn’t transferred that way. Clean up Ebola vomit, Ebola diarrhea, physically move Ebola victims from bed to bed, give them a sponge bath, tend wounds or other injuries, insert and remove IV’s, handle the bodies of recently deceased Ebola victims, and especially, give traditional treatment to those bodies which, as is done in many cultures, which may involve cleaning and even internal cleaning or handling of organs, etc. etc., and you’ve got a reasonable chance of getting Ebola. Even then, the number of health care workers who actually get Ebola is probably very small. Tragic and horrible when it happens, but a few out of thousands most directly exposed and at risk for months is a small number.

    The people who are being transported to the US are isolated, in negative pressure facilities, and are being handled with kid gloves. Well, latex gloves, actually. They can not infect anybody but their immediate caretakers, and those individuals are very well protected.

    There is a risk of a different sort, though. While these particular patients are being handled with great care, there are healthy helpers, medical workers or others, who have been working with Ebola patients and seem to have not contracted the disease, who are occasionally wandering off to their respective homes and, I’m pretty sure, not being quarantined. I am not sure if all the people involved in helping in West Africa are being tested or properly watched. They may be, but there is some evidence that this is not the case. I’d like to learn more about that, and I hope we don’t learn anything the hard way.

    One US based doctor has returned to the United States and decided to quarantine himself. Alan Jamison will keep himself separate from society for 21 days since his last potential exposure to Ebola.

    If he is doing this on his own, there is the implication that doctors or others who were working with Ebola victims are being allowed two wander off and commune with the rest of us with the prospect that they are infected and eventually could spread the disease. However, I’m not sure that this is true. I don’t know that Dr. Jamison was not tested, I don’t know how much exposure he had and I don’t know what the procedure is for managing this potential problem. This is one guy who may be making hay where there is no grass. Worst case scenario, though, is that a health worker gets sick, the beginnings of Ebola like symptoms emerge, and the health worker gets treated. Nobody who has been working with Ebola patient is going to get a head ache, feel like throwing up, and say to themselves, “Hmm. I wonder if I’ve got allergies or something?”

    We should be worried about people wandering off, leaving the sites of the outbreak, generally. That’s clearly how this has spread to begin with. This applies to health workers and regular people. It applies to journalists in the field. We should not assume, but we can reasonably hope, that people are doing the right thing. But even when they don’t, remember, this is not measles, which is highly contagious.

    (Also, in case you didn’t know, Ebola is of course already in the United States. See this.)

    Can the scary hollywood scenario happen?

    Yes, of course it can. There is nothing in that scenario, taken on its own, that can’t happen. Bodily fluids get around. People are confined on aircraft, share a bathroom, and occasionally eat each other’s cookies by mistake. I don’t think there is any scientifically valid way to suggest that people who are symptomatic with Ebola are anything but a nightmare on a regular airplane flight, hanging around in airports, sharing cabs, et. When I hear international health experts saying that the chance of Ebola transmission on an airplane is pretty much non existent, I want to ask them: Ok, so, you’ll be entering and leaving the sick rooms of Ebola patients, maybe taking your kids along because it’s Follow Your Parents to Work Day, and maybe even have your kid sit next to the patient in bed and read them a story, without any protective gear at all. Right? No, absurd.

    However, the crazy scenario I gave you above, with the vomit and the pillow and the bathroom, requires a lot of things to go wrong in sequence, which is pretty unlikely. Also, the worst case scenario is that a few people end up with Ebola. It would be very hard for that to spread in the US. We’re too good on our health care, even when it seems we are not. On the other hand, if an air route with a symptomatic Ebola patient is sending people to any of many other places, with high population density, little education or information about things like Ebola (or even a belief that it is not a disease you get from other people) and no monitoring, I’d worry that smaller outbreaks could show up in other countries or other cities, in West Africa, elsewhere in Africa, or beyond. You can say that chances are it won’t happen. But it did happen. Ebola is in multiple countries spreading from multiple sites in West Africa.

    I’m pretty sure the people who deal with Ebola, though, try to not take chances. Rhetoric to the contrary is to avoid panic. Avoiding panic is good, and in fact, panic is unnecessary. Ebola is not that contagious. But somewhere between being concerned and avoiding panic by making it sound like Ebola refuses to pass from person to person on air planes, there is clearly something lost in translation.

    Who cares about Ebola, it is not Malaria!

    To me this is one of the most insidious problems we have and it doesn’t just apply to Ebola vs. Malaria. Let me give you an example from an entirely different area.

    How much money have spent on the science of subatomic physics, say, just in the US. And, what are the benefits? More importantly, what were the benefits that were specified at the outset of various research projects, and which of those have been realized?

    The answer to that second question is probably zero, zero. No benefits were specified, and thus, any gained don’t count. You are probably thinking, “No, wait, what about the knowledge, and all that stuff!?? That was surely specified in the grant proposals!” No doubt, but simply advancing knowledge is not a benefit. How do I know that? Malaria! Those physicists may have advanced our knowledge, and as a side effect invented the DVD and stuff, but nobody cured Malaria. Therefore it doesn’t count.

    Sounds like an incredibly stupid argument, doesn’t it?

    Now, side step over to Ebola. Is creating, say, a vaccine to address Ebola worth it? No! Why? Because Malaria! Malaria is way bigger, kills more people, is a truly serious public health problem, Ebola is rare. So if you’ve got some research money don’t spend it on Ebola, spend it on Malaria.

    That would be the smart thing to do!

    This is also an incredibly stupid argument, for a few reasons. The only reason you can compare Ebola and Malaria is because they are both diseases. They aren’t even the same kind of disease, they don’t have the same geographical spread (though it is overlapping). But they are diseases, so when we consider spending resources on research in one, it is natural to compare to the others. But they are also two different things. If I had a million dollars in the bank of my Malaria Vaccine Research Institute and gathered all the scientists together and said, “OK, folks, until we’ve spent this one million dollars, I want you all working on Ebola instead of Malaria, K?” they would look at me funny for a while and then call my wife to take me home. Ebola is a virus, Malaria is a cellular organism. They are very different things. The expertise and lab equipment would not be in my Institute. I might as well tell my scientists to spend a million dollars working on the next generation of high definition TV. That would be cool! And, suggesting that we compare the costs and benefits of that project to working on Malaria or Ebola would be dumb.

    One of the benefits of working on a vaccine for ANY virus is advancing knowledge of vaccines for viral disease generally, and we have a lot of work to do on vaccines for viral diseases. Perhaps work on Ebola would have some great side benefits. Indeed, money spent on a vaccine for Ebola would very likely produce … wait for it … a vaccine! Money spent working on a vaccine for Malaria has thus far failed to produce squat.

    A vaccine for Ebola is probably relatively easy to develop. Ebola is not a human disease. It comes from an animal reservoir. Ebola, if hit with a vaccine in human populations, can’t evolve resistance to that vaccine (or other treatment). Humans have little or no history of immune response to Ebola, and a very long (in essence, multi million year long) history of immune response to Malaria and its cousins. Developing an Ebola vaccine would be like putting up a childproof gate in your house, where the 2 year old is Ebola and the childproof gate is the Vaccine. Developing a vaccine for Malaria is like trying to stop a squadron of Navy Seals from penetrating a drive-in theater at a date and time of their choosing.

    This is why literally billions of dollars has been spent … billions, seriously … on developing a Malaria vaccine and there isn’t one. I would venture to say that if we looked at the part of the money spent on Malaria research in general (including vaccines) that covered just couriers and postage over the years, we’d have enough to fund a full on Ebola vaccine development program. Maybe not. Maybe you’d have to add in a few percent of the money spent on conferences (which are very important, I’m not saying they are not) by Malaria scientists. There is probably more money being spent right now on retirement payments to retired scientists who spent most of their time working on Malaria than needed to build an Ebola Research Center that could get a vaccine out there in a few years. Seriously. Please don’t compare Malaria to Ebola and use that to suggest that we should ignore Ebola. The crumbs that fall off the pieces of Malaria cake at the Malaria birthday party would be enough to handle Ebola. (Bonfire of the Vanities Reference.)

    But still, why should we bother with Ebola?

    Why bother with any disease? Why not figure out which one disease causes the most mortality or morbidity, and disallow any research on anything else? Then, when that is solved, move on to the next one. There are several reasons to not do this. First, it might not be possible to solve the big bad disease quickly, or ever, so the entire research program would spin its wheels forever. Second, the second and third and way down to the tenth or twentieth diseases are all real disease people really get and that really cause suffering. While the argument that spending excessively on a rare disease is a poor choice, spending a modest amount on a very addressable problem that is also small is exactly what we should be doing. Third, you can and should think of some of this as pure research. Pure research is where scientists seek out the answers to questions in a special category of question: Questions that scientists ask. No other criteria need apply. Scientist tend to ask questions that are at the edge of knowledge, or perhaps that are hanging around this or that water hole of ignorance. Scientists ask the questions they ask because they have two characteristics: There is something unknown, and there is something about that unknown thing that is knowable. With research. Usually.

    Now go back to Ebola again. Doesn’t somebody want to know about Ebola? Of course they do. Ebola is one of a family of viruses, the Filovirus family, that includes some pretty benign viruses and a handful of nasty ones (Ebola isn’t the only one). In the past there was a lot of research interest in the filovirus family for use as a biological weapon. Imagine making an Ebola like virus that spread though the air! You could really kick ass, militaristically speaking, with such a weapons. But, fortunately, we as a species have recently decided to not view biological weapons as legitimate. Research on biological weapons continued, of course, long after they were outlawed because we assumed we needed to “understand them” (make them and test them on rats) in case the other guys were making them, so we could deal with them. But I’m pretty sure most of that research has gone by the wayside as well. I would not be surprised, and I’m not much of a conspiracy theorist so I don’t want to emphasize this too much, if a lot of the work to make an Ebola vaccine was in a file drawer somewhere.

    Also, there is the simple stark reality of Ebola. If you are a typical American you may not care about Ebola because it is in a different country and won’t get here and there are other problems. But say you are like my neighbor here in Coon Rapids, Minnesota, Decontee. Decontee is Liberian. She is part of a large Liberian community here in the Twin Cities. Many Liberians are American Citizens with strong ties to Liberia. There is constant travel back and forth. I asked a Liberian guy I know where he gets his sombe (a wonderful traditional West and Central African dish) and he said “From my grandmother.” “Does she grow it?” “Yes. In Liberia. I get it when I go there.” The point is, there is a lot of back and forth. To be an American who is Liberian is to be a member of a community of people who is currently, at this very moment, threatened with Ebola. People in your community, in your family, can get Ebola. Decontee’s husband and her sister in law both got Ebola and died of it last week. Ebola is a problem that affects communities that are Diaspora that include our very neighbors and friends. It should not be an orphan disease.

    So wait, there was way too much nuance and possibly contradiction here, what am I supposed to think?

    I don’t want to tell you what to think.

    But in this case I’ll make a suggestion.

    Do not be worried about the health workers being brought back to the US. Indeed, at this point, openly worrying about this can do little more than make you look a bit dumb and a bit insensitive.

    Yes, worry about the possibility of Ebola getting “out” to pretty much anywhere, elsewhere in Africa, to the US, etc., because it can. But don’t worry too much. The chances are low. Forget about this “Oh, Ebola is not transmitted between people on airplanes” magical thinking. Of course it is. But Ebola is always hard to transmit, even on airplanes. In other words, be realistic.

    Forget about this comparison between Ebola and Malaria. When the Malaria people turn up a vaccine after spending billions of dollars of research money we can make a comparison. At the moment, Ebola is probably a vaccine-ready disease, and Malaria is not. You are comparing apples and oranges. No, worse than that. They’re both fruit. You are trying to compare, in a cost benefit analysis, the efficacy of spending money on a new car vs. working out whether or not it is worth clipping coupons when you go to the grocery store. Why are you doing that?

    But, if you are a member of a community like the various African communities in the US, then you do indeed have more of a concern. Not so much that travelers will bring Ebola to your doorstep, though that is a tiny bit more likely for you than for some others, maybe. But because your community is being directly affected because your community lives in two worlds, and one of those worlds is being invaded by a monster.