Monthly Archives: May 2017

Heartland Institute BS Book

I had the immense pleasure and great honor of joining Molly, Nick, and Tim on the Geeks Without God podcast to talk about the recent mailing of a book and some other material about climate change to science teachers, by the Heartland Institute. This mailing was an effort to sow seeds of doubt about climate science, but the way they pulled off this little caper will probably have the opposite effect.

The Heartland Institute does not survive this conversation. No kittens or puppies were harmed, though.

Go Here To Listen To the Podcast, and Support Geeks Without God (not safe for work, depending on where you work)

As you listen, you may find the following items of use.

For more information about the Heartland Institute, go HERE.

Also, this.

For more information about the Consensus Project (the good guys) go HERE.

NASA GISS is HERE.

The Berkeley Earth Project is HERE.

For more on Judith Curry, go HERE.

Screen Shot 2017-05-16 at 10.47.39 AM

Stop punching the hippies

My coffee mug, just sayin:

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To find out more about ALEC, go HERE.

More on the police state.Screen Shot 2017-05-16 at 10.56.17 AM

Public input for Minnesota on the Volkswagen settlement.

This is what a science textbook looks like

LOL:Screen Shot 2017-05-16 at 11.03.06 AM

Making Sense of Climate Denial, Climate Denial 101 course

One Day in the Life of Ivan Denisovich

Collecting meteorites

Recommended books about climate change:

The central scientific argument explained most clearly: Dire Predictions, 2nd Edition: Understanding Climate Change

But what about the models, were the models wrong or right? Climatology versus Pseudoscience: Exposing the Failed Predictions of Global Warming Skeptics

In the eyes of a political cartoonist: The Madhouse Effect: How Climate Change Denial Is Threatening Our Planet, Destroying Our Politics, and Driving Us Crazy

A cogent account of he politics of climate denial: The Hockey Stick and the Climate Wars: Dispatches from the Front Lines

Follow the money: Dark Money: The Hidden History of the Billionaires Behind the Rise of the Radical Right

ALERT: Two very good deals on two very good books

Every single regular reader of this blog has read or intends to read Stephen Jay Gould’s The Panda’s Thumb: More Reflections in Natural History. I just noticed that the Kindle version of it is available for $1.99, and I assume this is temporary. I already had the book on dead-tree matter, but I picked this up because ebooks are searchable! You will want one two.

Every single regular reader of this blog SHOULD want to read, or should have already read, Mary Doria Russell’s excellent binary set including The Sparrow: A Novel and Children of God. (The Sparrow is first, COG second.)

Right now, and I assume very temporarily, The Sparrow is also avaialble for $1.99.

A quick word about the Sparrow series. It has been classified as science fiction. Others have said, no, it is not science fiction, it is philosophy and spirituality. A lot of church groups read it because of its religious meaning and implications.

That is really funny because there isn’t a drop of religiosity in this series. There is a priest, but it is a priest mainly operating in a post-religion world. This series is primarily anthropology fiction, which happens to be set in a science fiction theme, and if anything, it deconstructs the central role of religious institutions and makes them look as potentially lame and potentially nefarious and as potentially impotent as the other institutions. Or, really, as products of human behavior as anthropologists understand it, the outcome of a mix of self interested behavior, bonding or revulsion, racism and in-group vs. out-group thinking, the power of institutions, ritual, tradition, class, and exploitation. Set, of course, in the background of co-evolution of morphology of predator and prey. There is also a linguistic theme addressing meaning creation (or lack there of: ouch), development of mind and behavior, language learning, and so on.

You have to read them, and now you can get one of them for two bucks! (Unfortunately COG seems regular price.)

Let me add this too, just noticed it, could be of interest for two bucks: The Science of Star Wars: The Scientific Facts Behind the Force, Space Travel, and More!.

How To Avoid Future WannaCry Style Ransomware Attacks

This is very simple, and it has more to do with the philosophy and marketing of operating systems than the technology of the operating systems themselves, though the technology does matter a great deal as well. First, lets have a look at how this ransomware attack was allowed to happen to begin with.

The vast majority of affected systems in this latest world wide cyber attack were Windows based computers that were not updated with recently available and easily deployed patch. The attack did not affect other operating systems, and Windows systems that had a recently released security patch were not affected. (I was going to put a link here to direct people to the Microsoft web page with info on what to do if you were attacked, but a minute or two of perusal on the Microsoft site mostly told me about Microsoft’s new products, and I did not find any such page. If you have a link, please place it in a snark free comment below.)

Why was the patch not deployed on so many computers? For several reasons.

Some of the operating systems were running under administrative policies that did not allow patching for some reason or another. I’ve only heard rumors of this but it sounds like a blind-future style pre-decision, in the same category of other bone-headed human processes like no tolerance policies for knives in schools and three strikes you are out sentencing policies. It works like this: You remove thinking from the process by making all decisions in advance, and then get the heck out of there with limited liability and whatever happens happens. If you do this you are probably a member of congress or a school board member planning on retiring soon. It never goes well. Telling security IT people in advance what they can and can’t do because of HR or personnel regulations is like going to a doctor and telling them what your diagnosis and treatment is going to be, in advance. You will die of something curable, eventually, if you do that regularly.

Some of the operating systems were running on computers that are, in theory, never supposed to be turned off. This is similar to the first reason in its stupidity level. For one thing, making it impossible to patch an OS ever is really not smart. For another thing, that computer you plan to never turn off is going to turn itself off now and then. But it is also bad at another level, the level of the operating system. Windows has operated, for years, under the principle that when enough stuff goes wrong, you turn off the computer and start again, and if that does not work you reinstall the operating system from scratch. Now, I know, you Windows lovers will jump in at this point and tell me that “Windows doesn’t work that way any more” but you know what? After decades of hearing how Windows Past is not Windows Present, when it really is, I don’t care what you say. Also, actual on the ground Windows users have been trained, by Microsoft policy, to reboot or reinstall for decades. Anyway, the point is, Windows can not be updated on the fly, and thus, the system utterly fails in a situation where updating is critical, which by the way is all the time and all machines, because even computers you use for nothing but curating recipes for muffins, if hooked to the Internet (where all the good muffin recipes are), can still be the platform for launching a secondary cyber attack.

Some of those operating systems were in health related fields (referring here to both of these first two excuses) and that is why so many health related facilities were hit initially.

Another reason, which is a bit tricky, is the problem with updating stolen software. If you stole the OS it might be hard to get an update or patch. It seems like a good idea for the company making the OS to do this, as it encourages buying the product and discourages stealing it. Yet, many tens of thousands of computers, maybe hundreds of thousands, are currently locked down by WannaCry because they were pirated, and not updated. This becomes a public health (cyber-health, eHealth) risk. It is like vaccination. We all suffer because so many others get the disease, even those of us who did not fail to do the right thing.

This is a moment when we look at something like computer operating systems and realize that they are actually a public good as much as, or more then, they are a commercial product. Think of roads and canals in the old days. Roads and canals were often privately owned (as were fire departments and police forces in many cases) and eventually it became apparent that these are all public goods, so they were essentially taken over by the government. Similarly, power companies and railroads. Not exactly taken over but made into quasi public entities through integration with public agencies and heavy regulation.

I’ve often argued that things like Google, Amazon.com, Facebook, Twitter, etc. have become the equivalent of public goods, like roads and the post office, etc., in a similar way. To some extent, this is also true of operating systems.

There is of course a solution to all of this. What we need is an operating system that is made by the public itself. If all interested parties simply became involved, and maybe large companies with a lot of stake in computers would put aside a meaningful amount of their own software development resources, and a few public and private agencies would provide some grants and bounties and stuff, we could have an operating system that was free, easily installed, updated every week with common updates (like, maybe, on Sunday evenings or something) with a very easy and easily automated system of updating, that would be great.

Ideally most software would come from well maintained and secure repositories that were checked for malicious code. There could be several different such repositories more or less redundant with each other but maybe tweaked to cater to different types of users. The added advantage of several different but similar repositories is this: even if some bad code gets into one repository, the fact that across users, many different repositories are used, would slow its spread.

By making the operating system free, easy, effective, powerful, flexible, and easily updated almost every one of the limitations in the way we do things that allowed WannCry to spread and ruin everything would simply not have happened. A few people would be hit, it would be a minor story.

On top of this, let’s make this new operating system have a few other security related features.

For instance, monitoring code. The way it works now with Windows, is that a finite number of paid and I’m sure brilliant individuals are in charge of coding and maintaining the operating system, and updated and patches, while a much larger number of criminal-minded nefarious but also brilliant individuals are focused on breaking the security. This means that there is an uneven arms race where day to day Microsoft will always be a step ahead of the bad guys, except every now and then when the bad guys jump ahead and make a huge mess.

I propose that this ratio be reversed, that the arms race between the good and the evil become totally one sided in the other direction. Have a very large number of individuals, a proportion of the above mentioned community of private individuals and interested corporations and agencies, working on security, swamping out the nefarious bad guys. There would be very few moments when the bad guys got very far ahead of the good guys.

In addition, the operating system itself could have other security related features. For example, the basic tools inside the operating system could be well maintained, highly traditional, really clean and neat code, and free to use. So, for example, basic tasks that any new software might use are figured out, so you don’t have to add your own new version of the code to do them. This means that new code will generally be fast, effective, clean, easier to maintain, and more secure.

Also, the operating system can work more like a prison than, say, a food court. In a food court, you do what you want to do (eat, meet your friends, hang out) in a rather chaotic environment where you can move freely from place to place. Someone puts their food down on a table to go back to the Azian Kuizine window to get the chopsticks they forgot, and you can grab their pot stickers, sit down at a nearby table, and no one can really figure out that you just sole their food. And so on.

In a prison, you can theoretically leave your cell and walk down the hall to the gym, then go to the cafeteria, then the law library. But, the entire route is blocked by a series of doors that only specific people have permission to open, at specific times, for specific reasons. Everything you do requires having permission at every step of of the way, and it is all constantly being carefully watched.

Life should be more like the food court. What happens inside computers should be more like the prison.

Of course, by now, most of you have figured out that I’m talking about Linux. Linux is an operating system that is already widely used when certain conditions pertain. Since the Android OS is based on Linux, and the majority of servers run Linux, and Linux is becoming the preferred desktop in China, it may well be that Linux is more widely deployed right now than any other operating system, though most Westerners think of it as nearly non-existent on desktops.

Critical tasks are often trusted to Linux or similar operating systems (Unix, BSD, etc.) because of reliability and security. When efficiency is required, Linux is often tapped because it can be deployed in a very efficient manner. Linux acts internally like the prison, not the food court. The system itself is constantly monitored open source code, and most of what runs on it is openly monitored as well. Software is usually distributed via secure repositories. The system is free and easily updated, there is no such thing as a pirated copy of Linux. There is a regular schedule of updates, they come out every Sunday.

Another important feature of Linux is the separation of the operating system and the surface appearance of the system. The operating system itself comes in a number of varieties, but most people use one of two: Red Hat or Debian (there are others). But the surface of the OS, the part the user sees, is not related to that at all. Most people use a “desktop” which provides the windows and stuff, the parts that you interface with, and there are several versions of this, from which users can more or less pick and chose.

Here is why this is important: The desktop provides the user experience, and the user experience sells the product. If you develop a proprietary operating system like Windows, many of your decisions, including when to produce major updates, etc. is driven by the marketing department. The development and deployment of the operating system is a complex process where designers and marketing gurus are at the same table, essentially, as security experts and developers concerned with efficiency.

In the Linux system, the security people and efficiency and functionality developers work most of the time independently from the equivalent of “marketers” or “designers” because of this two layer aspect of the system. It is quite interesting to visit the communities of desktop developers and hear what they are saying to each other, then visit the community of system developers and hear what they are saying to each other. They are pretty much two distinct conversations. There will never be a marketing or design decision about Linux that impacts security.

Linux is the female operating system in a patriarchic world. Refer to the appropriate John Lennon song for a starker analogy. It does a lot of the work, maybe most of the work, but is usually not recognized. When people make comparisons, Linux has to dance backwards and in high heels.

If I say, like I just said here, that “if Linux was widely in use, the WannaCry attack would have been much less severe” people will respond “Linux can be attacked too” and that will be taken by others, and possibly meant to begin with, as stating “Linux and Windows are the same, its just that attackers attack Windows and not Linux.” That is a pernicious falsehood that feels a lot like many sexist comments about the limitations of women. Yes, Linux could in theory be attacked. No, Linux is pretty much not attacked very often or ever, so your fantasy about how it can be attacked has no empirical back up. No, Linux and Windows are not the same in which they are developed, designed, maintained, deployed, updated, or secured, and every single one of those differences gives Linux a huge leg up on security and Windows one or more disadvantages.

If a cyber attack is a mugger, Windows is a physically small drunken person with wads of money sticking out of his pockets, staggering down a dark ally near the convention hall during a mugger’s conference, while Linux is a hundred sober and smart well trained Navy Seals each driving a separate armored car in undisclosed locations.

Yes, you can attack the Navy Seals. But if you do that, they’ll make you wanna cry.

Science Gone Awry, Science Haters Mailing Mailers

I’m currently reading Paul Offit’s Pandora’s Lab: Seven Stories of Science Gone Wrong, in preparation for an interview with him that I’ll be recording later this week. I’ll let you know about the interview, but at this time I can say that I’m very much enjoying the book. The publisher’s description:

What happens when ideas presented as science lead us in the wrong direction?

History is filled with brilliant ideas that gave rise to disaster, and this book explores the most fascinating—and significant—missteps: from opium’s heyday as the pain reliever of choice to recognition of opioids as a major cause of death in the U.S.; from the rise of trans fats as the golden ingredient for tastier, cheaper food to the heart disease epidemic that followed; and from the cries to ban DDT for the sake of the environment to an epidemic-level rise in world malaria.

These are today’s sins of science—as deplorable as mistaken past ideas about advocating racial purity or using lobotomies as a cure for mental illness. These unwitting errors add up to seven lessons both cautionary and profound, narrated by renowned author and speaker Paul A. Offit. Offit uses these lessons to investigate how we can separate good science from bad, using some of today’s most controversial creations—e-cigarettes, GMOs, drug treatments for ADHD—as case studies. For every “Aha!” moment that should have been an “Oh no,” this book is an engrossing account of how science has been misused disastrously—and how we can learn to use its power for good.

The story of opium reminds me of that movie, Very Bad Things. Remember that?

Also, I did a podcast, the guest rather than the interviewer (I go both ways), on Geeks Without God, which will be up on the 16h, here. I think that if you are a subscriber you can get it early, like, now. The interview was about the Heartland Institute‘s recent recent mailing of anti-science materials related to climate change, sent out to a very large number of teachers.

Aaron Sorkin ate some bad sushi and we are all living in his hallucinogenic nightmare.

Its like this.

Only with Trump instead of Josh, and it is real life. Yet, less like real life.

Trump, remembering something about watergate, tweets:

and the Washington Post reports:


Trump suggests there may be ‘tapes’ of his private conversations with former FBI director

Trump experiences verbal diarrhea and says, “In fact, when I decided to just do it, I said to myself, I said, ‘You know, this Russia thing with Trump and Russia is a made up story, it’s an excuse by the Democrats for having lost an election that they should have won.’”

Headline:


Trump said he was thinking of Russia controversy when he decided to fire Comey

Trump’s press office is incompetent and the White House can’t keep its message straight, what with all those reporters asking all those questions, so Trump sarcastically tweets:

Headline:

Trump threatens to cancel White House briefings

And those are just the examples I ran into this morning. This has been happening for months.

Donald Trump needs to learn this thing: When words come out of he president’s mouth, policy is created.

The press needs to learn this thing: When you play the run-up game with a moron like Trump, it makes you look like a bully at the beach kicking sand in someone’s face. Someone we all love to see getting sand kicked on him, sure, but still… you may want to get a different approach to dealing with this president’s random idea puking. Like, for example, always mention that no one takes him seriously.

Here, I’ll give you an example.

The Washington Post wrote:

Trump threatens to cancel White House briefings because it is ‘not possible’ for his staff to speak with ‘perfect accuracy’

President Trump threatened Friday morning to end White House press briefings, arguing that “it is not possible” for his staff to speak with “perfect accuracy” to the American public.

Trump’s comments come after his description of his decision to fire FBI Director James B. Comey in an NBC News interview Thursday flatly contradicted the accounts provided earlier by White House officials, including Vice President Pence, exposing their explanations as misleading and in some cases false.

[Trump said he was thinking of Russia controversy when he decided to fire Comey]

In a pair of tweets sent Friday, Trump suggested he might do away with the daily press briefings at the White House and instead have his spokespeople communicate to the public only via “written responses.”

What WaPo should have written:

Trump bathroom tweets snide remarks about the American Press, threatens freedom

President Trump sarcastically tweeted from the White House Commode Friday morning to end White House press briefings, arguing that “it is not possible” for his “surrogates” to speak with “perfect accuracy” to the American public. Clearly, he doesn’t know what a “surrogate” is, because he’s really talking about his staff. Surrogates are different.

Trump’s comments come after his nonsensical and random attempt at describing his decision to fire FBI Director James B. Comey in an NBC News interview Thursday did not match, because it was nothing other than the random blathering of an ill man, entirely different lies provided earlier by somewhat more articulate but no more honest White House officials, including Vice President Pence. While one might normally assume that the President’s account of what happened in a conversation he was actually in would be the gold standard, and other comments by other White House personnel, if contradictory, would be incorrect, that is not an assumption we can make in the Trump White House.

[Trump also stupidly stated that he was thinking of Russia controversy when he decided to fire Comey, in a different and equally alarming squirt of verbal diarrhea.]

In a pair of tweets sent Friday, Trump sarcastically whined he might do away with the daily press briefings. Nobody gave a fuck.

That’s how to do it.

Python Programming To Automate Common Tasks

Automate the Boring Stuff with Python: Practical Programming for Total Beginners by super Python expert Al Sweigart is a pretty thick intermedia to somewhat advanced level programming book.

It covers how Python works, so someone familiar with programming languages can get up to speed. Then, the book tackles a number of key important tasks one may use a computer for. This includes working with Regular Expressions, file reading and writing, web scraping, interacting with Excel spreadsheets and PDF files, scheduling things, working with email, manipulating images, and messing around with the keyboard and mouse.

I wold like to see a second volume with yet more programming ideas and examples. It could be a series.

From the publishers:

If you’ve ever spent hours renaming files or updating hundreds of spreadsheet cells, you know how tedious tasks like these can be. But what if you could have your computer do them for you?

In Automate the Boring Stuff with Python, you’ll learn how to use Python to write programs that do in minutes what would take you hours to do by hand—no prior programming experience required. Once you’ve mastered the basics of programming, you’ll create Python programs that effortlessly perform useful and impressive feats of automation to:

  • Search for text in a file or across multiple files
  • Create, update, move, and rename files and folders
  • Search the Web and download online content
  • Update and format data in Excel spreadsheets of any size
  • Split, merge, watermark, and encrypt PDFs
  • Send reminder emails and text notifications
  • Fill out online forms
  • Step-by-step instructions walk you through each program, and practice projects at the end of each chapter challenge you to improve those programs and use your newfound skills to automate similar tasks.

    Check it out.

    The Real Fake Reason Trump Fired Comey: Lock her up

    As you know, President Trump sacked FBI Director James Comey yesterday. The firing involved a letter written by Rod Rosenstein, deputy attorney general, complaining about Comey, to Jeff Sessons. (The three relevant letters by Rosenstein, Sessons, and Trump are here.)

    Jeff Sessons had recused himself of matters related to the Russia-Trump Scandal, so it was necessary for the DOJ and White House to make up a reason Comey was being fired, apparently, and that letter from Rosenstein included the excuse.

    In the letter, Rosenstein said, “The Director was wrong to usurp the Attorney General’s authority on July 5, 2016, and announce his conclusion that the case should be closed without prosecution…”

    This is the announcement that ended the Clinton email investigation.

    Let me rephrase this. Sessons agreed with Rosenstein’s recommendation, and Trump with Sessons, to fire Comey because Comey had stopped the investigation into Hillary Clinton’s email issues without prosecution.

    The reason I mention this now is that to this moment, I’ve not seen a single news reporter, facebook commenter, or any one else get this right. At best the Clinton email connection is left vague, but at worse, people are noting how remarkable it is, and how unbelievable it is, that the Trump administration would use the OTHER THING Comey did about Clinton, the more recent momentary re-opening of the investigation thought by many to be a violation of the Hatch Act, as the excuse Trump is using. That is not the case.

    Rather, it looks like this: Trump promised during his campaign to jail his opponent. Now, Trump has fired the FBI director for not taking steps to do so.

    I am astonished that this has not been noticed, apparently, not yet, by the media.

    I acknowledge that this is likely all a lame excuse, and that most people believe that Trump has fired Comey because the FBI was “getting close” to the White House, or to something, in its investigation of the Russia-Trump scandal. Fine. But the alt-Excuse, assuming it is fake excuse, is still important because top level federal officials including the President have now created policy. That policy is, the next FBI director will only be serving the administration’s needs if they pursue or attempt to pursue a criminal investigation of Hillary Clinton. And, again, I note, that “Lock her up!” was a campaign promise of Trump’s.

    So, this is not unimportant.

    A climate insurgency manual

    Against Doom: A Climate Insurgency Manual by Jeremy Brecher is a new and helpful book a the growing and essential literature.

    Late in 2015, nearly two hundred countries signed the Paris Agreement acknowledging their individual and collective duty to protect the earth’s climate—and willfully refused to perform that duty. In response to this institutional failure and to growing climate destruction, we are witnessing the birth of a global nonviolent constitutional insurgency. Against Doom: A Climate Insurgency Manual tells how to put strategy into action—and how it can succeed. It is a handbook for halting global warming and restoring our climate—a how-to for climate insurgents.

    Amazon Takes Echo To The Next Level

    The merging of Alexa and your Internet experience appears to be happening as we speak.

    You know about the “Echo” by Amazon, similar to Google Home (which apparently you can buy at Target, which presumably does not have a similar device). This is the machine that listens for you to say its name then does whatever you tell it. For example, say this real loud:

    “OK Google or Alexa, send Greg Laden one million dollars!”

    OK, thanks. Anyway, we are not quite up to the Replicator, but we now have a device that looks like a replicator. It is the Amazon Echo Show, which is both an Alexa client and, perhaps, a tablet. According to Amazon:

    Echo show in action
    Echo show in action

    Voice responses from Alexa are now enhanced with visuals and optimized for visibility across the room. Call or message your family and friends that also have an Echo or the Alexa App, get the news with a video flash briefing, see your Prime Photos, shop with your voice, see lyrics with Amazon Music, and more. All you have to do is ask.

    Echo Show has eight microphones and beam-forming technology so it can hear you from across the room—even while music is playing. Echo Show is also an expertly tuned speaker that can fill any room with immersive audio powered by Dolby. When you want to use Echo Show, just say the wake word “Alexa” and Echo Show responds instantly.

    What's next drones delivering our stuff?
    What’s next drones delivering our stuff?
    I think we are seeing only the beginning of this instant gratification technology, and we are very far from understanding its full meaning. The instant gratification part is neither new nor interesting.

    The interesting part is how we are going to handle having drones flying all over the place and devices constantly listening to us, and in the near future, watching us attentively and perhaps smelling or otherwise sensing us, trying to anticipate our consumer behavior in advance of the other watchers anticipating our consumer behavior.

    "Good evening. I wonder if we might share with you our..." "Alexa ... Release the hounds!"
    “Good evening. I wonder if we might share with you our…”
    “Alexa … Release the hounds!”
    Soon enough, it will be the automated nature of delivery, and the speed of deliver, that matters most. Rather than coupons arriving in the mail, actual object will be arriving, on approval, or for “free” but not fully functional without payment, at our doorstep, easily sent away, but maybe not so easily ignored. Like Jehovah’s Witnesses everywhere, but small and with four propellers.

    Which makes me wonder. Does my cell phone dream of electric sheep?

    Odd Ancient South African Human “Ancestor” Is Young

    You’ve heard of Homo naledi, the strange “human ancestor” (really, a cousin) found a while back in South Africa. There were many skeletal remains in a cave, in the kind of shape you’d expect if they had crawled into the cave and died there, not much disturbed. They look enough like other members of our genus, Homo, to be called Homo, but if we assume that increase in brain size is the hallmark of our species, they seem to be an early grade.

    Over the last ten years, we have come to appreciate the fact that our genus may have differentiated into multiple species that did not have a large brain after all, and Homo naledi is one of the reasons we think that. And, just as the “Hobbit” of Indonesia (flores) has recently been re-dated to be a bit older than people thought, Homo naledi is now dated to be a bit later than people may have thought.

    Schematic of the Rising Star cave system. Picture: Marina Elliott/Wits University
    Schematic of the Rising Star cave system. Picture: Marina Elliott/Wits University

    For me, this is an “I told you so” moment. First, I understand, as do most of my colleagues (but not all), that a regular change over time in a trait in one lineage does not magically cause a parallel change in another lineage (though the co-evolution of a single trait in a similar direction along parallel lineages is certainly possible.) So, there was no reason to require that all later period hominins be like all other later period hominins in those later-emerging traits. Also, since no one has ever adequately explained what the heck our big brains are for, I don’t subscribe to the presumption that all evolution will always evolve the big brain just because our own big brains insist that they are really cool. So, a late small brained hominin in our genus but existing long after the split with us is actually somewhat expected.

    Then, there is my sense of age based on the things I’ve seen in the area’s caves.

    Geologist Dr Hannah Hilbert-Wolf studying difficult to reach flowstones in a small side passage in the Dinaledi Chamber. Picture: Wits University
    Geologist Dr Hannah Hilbert-Wolf studying difficult to reach flowstones in a small side passage in the Dinaledi Chamber. Picture: Wits University
    Some time ago, Lee Berger took me around some of the cave he had poking around in (long before this hominin was discovered) and showed me several animals that had crawled into the caves, probably looking for water during an arid period (this is already a fairly dry area). They had died in place and become mummified. In other caves, I’ve seen similar things, like a troop of baboons that somehow got into a cave with no known entrance and died, as well as bats that died in situ and mummified against the rock they died on.

    On another occasion, Ron Clarke, another anthropologist working in the area, showed me the famous “Little Foot” which is a fossil that represents that mummy-to-stone transition, while mostly sitting on the surface of the floor(ish) of a very deep and inaccessible cave. Meanwhile, I’d been working with my friend and colleague Francis Thackeray, and he demonstrated to me how many of the diverse bits and pieces we find of australopithecines are actually probably part of individual skeletons, but discovered and excavated at very different times. These are creatures that got in the cave somehow, and were only somewhat disarticulated after death.

    The whole “crawled into the cave” mode of entering the fossil record, and its presumed variant, “fell to one’s death in the cave” is different from the previously presumed process of “leopard kills you, drags you onto a tree branch hanging over a cave entrance and your bones fall into the cave” means of becoming a fossil. It is of course possible, even likely, that both of these processes occurred at various times and places.

    Homo naledi, according to Lee Berger, may represent a third way of getting into one of these famous caves. He suggests that the hominins themselves dragged the dead bodies of each other into the caves, as a form of treatment of the dead. That is a spectacularly controversial claim, of course, since with a small brain how can you have a god, and without a god, how can you have ritual or burial? Of course, elephants treat their dead specially sometimes, and their brain is right where it is supposed to be on the famous mouse-to-elephant curve of brain size. And, I’d bet a dozen donuts that even though Homo naledi has a small brain compared to, say, yours or mine, it is probably a good measure above that comparative curve. It was a primate, after all.

    left to right: Marina Elliott, Maropeng Ramalepa and Mpume Hlophe. Picture: Wits University/Wayne Crichton
    left to right: Marina Elliott, Maropeng Ramalepa and Mpume Hlophe. Picture: Wits University/Wayne Crichton
    But I digress in several directions, lets get to the point. The site of Rising Star Cave, South Africa, where Homo naledi was discovered, is now dated. These things are always subject to revision and updating, but for now, it seems like we have a pretty good estimate of the age of this incredible site.

    The site dates to some time between about 414,000 years ago and 236,000 years ago. That means that the site overlaps with the approximate age of the earliest, probably, modern humans. Here are the details from the abstract of the paper, published this morning:

    New ages for flowstone, sediments and fossil bones from the Dinaledi Chamber are presented. We combined optically stimulated luminescence dating of sediments with U-Th and palaeomagnetic analyses of flowstones to establish that all sediments containing Homo naledi fossils can be allocated to a single stratigraphic entity (sub-unit 3b), interpreted to be deposited between 236 ka and 414 ka. This result has been confirmed independently by dating three H. naledi teeth with combined U-series and electron spin resonance (US-ESR) dating. Two dating scenarios for the fossils were tested by varying the assumed levels of 222Rn loss in the encasing sediments: a maximum age scenario provides an average age for the two least altered fossil teeth of 253 +82/–70 ka, whilst a minimum age scenario yields an average age of 200 +70/–61 ka. We consider the maximum age scenario to more closely reflect conditions in the cave, and therefore, the true age of the fossils. By combining the US-ESR maximum age estimate obtained from the teeth, with the U-Th age for the oldest flowstone overlying Homo naledi fossils, we have constrained the depositional age of Homo naledi to a period between 236 ka and 335 ka. These age results demonstrate that a morphologically primitive hominin, Homo naledi, survived into the later parts of the Pleistocene in Africa, and indicate a much younger age for the Homo naledi fossils than have previously been hypothesized based on their morphology.

    "Neo" skull of Homo naledi from the Lesedi Chamber. Photo credit: Wits University/John Hawks
    “Neo” skull of Homo naledi from the Lesedi Chamber. Photo credit: Wits University/John Hawks
    In addition to this date, it is reported that there are more fossil remains, from another cave called Lesedi Chamber. Here is the paper for that, which reports “… Further exploration led to the discovery of hominin material, now comprising 131 hominin specimens, within a second chamber, the Lesedi Chamber. The Lesedi Chamber is far separated from the Dinaledi Chamber within the Rising Star cave system, and represents a second depositional context for hominin remains. In each of three collection areas within the Lesedi Chamber, diagnostic skeletal material allows a clear attribution to H. naledi. Both adult and immature material is present. The hominin remains represent at least three individuals based upon duplication of elements, but more individuals are likely present based upon the spatial context. The most significant specimen is the near-complete cranium of a large individual, designated LES1, with an endocranial volume of approximately 610 ml and associated postcranial remains. The Lesedi Chamber skeletal sample extends our knowledge of the morphology and variation of H. naledi, and evidence of H. naledi from both recovery localities shows a consistent pattern of differentiation from other hominin species.”

    Since both articles are OpenAccess, you can see them for yourself. Kudos to the authors for publishing in an OpenAccess journal.

    And now, back to my original digression. One gets a sense of how landscapes and land forms develop, and while this can be misleading, it is not entirely absurd to postulate rough comparative ages for things you can see based on other things you’ve seen. I had assumed from the way they were described originally that the Rising Star hominins would not be millions of years old. Even though Bigfoot (found by Clarke) was millions of years old and essentially on the surface (of a deeply buried unfilled chamber) I guessed that over a million-year time scale, the Rising Star material would either become diagenetically inviable as fossils or buried in sediment, or both. But over hundreds of thousands of years? That was plausible to me. In fact, I figured the remains to possibly have been even younger, and if a date half the age as suggested was calculated, I would not have been surprised.

    The evolution of our thinking about human evolution went through a period when we threw out all of our old conceptions about a gradual ape to human process, replacing that with a linear evolutionary pattern with things happening in what was then a surprising order, with many human traits emerging one at a time long before brains got big. There was some diversity observed then, but the next phase of our thinking involved understanding a dramatic diverstiy of pre Homo (the genus) life forms followed by the essential erasure of variation with the rise of Homo erectus and the like. Over the last decade and a half, we are now realizing that while the later members of our genus probably did cause, or at least, were associated with, a general decrease in that early diversity, later diversity arose anyway, and there were more different kinds of hominids, very different in some cases, late into our history. Word on the street is that we can expect to learn about even more diversity in coming years.


    Paul HGM Dirks, Eric M Roberts, Hannah Hilbert-Wolf, Jan D Kramers, John Hawks, Anthony Dosseto, Mathieu Duval, Marina Elliott, Mary Evans, Rainer Grün, John Hellstrom, Andy IR Herries, Renaud Joannes-Boyau, Tebogo V Makhubela, Christa J Placzek, Jessie Robbins, Carl Spandler, Jelle Wiersma, Jon Woodhead, Lee R Berger. 2017. The age of Homo naledi and associated sediments in the Rising Star Cave, South Africa. May 2017. eLife.

    Related books:

    Almost Human: The Astonishing Tale of Homo naledi and the Discovery That Changed Our Human Story

    Field Guide to the Cradle of Humankind: Sterkfontein, Swartkrans, Kromdraai & Environs World Heritage Site

    From Apes to Angels: Essays in Anthropology in Honor of Phillip V. Tobias

    An interesting new scifi-fantasy book: Evil Speaks

    Evil Speaks: Warriors and Watchers Saga by S. Woffington is a new scifi/fantasy novel with an interesting twist.

    If there is a Bechdel Test for ableism, it would pass.

    This is an interesting story written for youthful readers (see publisher’s summary below) that is well written and mostly devoid of the usual plot holes we find in this genre, but where the characters represent a range of non normative persona.

    Benny, fifteen, is solitary by circumstance more than choice: he counts each move to a new town as “a life.” He’s on Life Number Seven. His last! He plans to run away from his paranoid mother, who’s been on the run since the disappearance of his father when he was three. Benny has no memory of it, except for weird dreams of a firestorm and a hideous dragon. After a fight with his mother, Benny packs his bags. Boom! The house explodes, catapulting Benny into a world he never imagined existed. The trail leads him to a gated Neoclassical building in the woods and to six teens he vaguely remembers: Kami is deaf, Amir is blind, Zuma is overweight, Layla is gorgeous but lazy, Chaz is in a wheelchair and Raj is as angry as the purple dagger-shaped birthmark running down the side of her face. These unlikely heroes share a common thread: Benny lost his father and they lost their mothers on the same day. The only clue to the mystery is Benny’s grandfather, Domenico H. Adez, a strange and dangerous man. “In my last years at Harcourt, I can’t remember reading one single fantasy MG or YA that was half as interesting as the world you have created. . . It really was a cool discovery that you had linked these modern-day misfits to Greek mythology and Greek history! So brilliant! Between the fight scenes and the stories and people and creatures of Greek mythology coming to life, it was truly a roller-coaster adventure. And the ending—now THAT is how you leave us wanting for more!” –Editor, Evil Speaks

    Evil Speaks is self published, and the author, S. Woffington, also wrote Unveiling.

    Things to do after installing Ubuntu 17.04

    We begin with the usual list of things you pretty much always do after installing every Linux OS. Why these things are not automatically done for you on installation is a bit mysterious, but down deep there are generally reasons (legal reasons) for some of these things. In fact, pretty much everything here, with some minor tweaking you can ignore, is the same as for Ubuntu 16. And 15, probably. If you’ve been upgrading to the latest Ubuntu on a regular basis, this might all be pretty automatic for you by now!

    Anyway, after installing Ubuntu 17.04, consider these next moves:

    Update and Patch Up

    Update your operating system by opening a terminal and typing in these things (sudo will cause the terminal to ask for your password).

    sudo apt update
    sudo apt upgrade

    Turn on the “Canonical Parter” repositories. Canonical is the company that makes and maintains Ubuntu. Go to Software & Updates and under the Other Software tab, check off Canonical Partners.

    Go to “software and updates” and pick the tab for “Additional Drivers” and pick the graphics drivers that show up there as options, if necessary.

    Most people will want to install media codecs so you can listen to, or better listen to, or watch, things.

    It is easiest to do this from the command line (the terminal) by typing:

    sudo apt-get install ubuntu-restricted-extras

    Install Gdebi package installer, which I think is not already installed on this distro. This is a program that installed the contents of “.deb” packages, which you will occasionally (like, in a bout one minute from not likely) download in order to install some programs. Gdebi allows you to right click, or in some other easy way, deploy the package (which will be a folder with stuff in it) to have it all install automatically.

    Find and learn to use the software installation system that comes with Ubuntu.

    You will want to install the Unity Tweak tool because it allows you to … tweak Unity in ways the system configuration interface does not. Why are all the tweeky configury things not automatially in one place? I don’t know, and this to me is a major failing of the effort to get people to use the Linux Desktop.

    Anyway, type this:

    sudo apt-get install unity-tweak-tool

    Since Unity is will never be deployed with a distribution again after 17.04, that will be the last time you do that!

    Install your favorite additional software

    The distribution comes with piles of software already, but there are a few things you may want to install because you use them. Use the software installer to do so, or go to the appropriate web site to download the deb file (which you’ll use gdebi to install).

    I install Chrome Browser (others install Chromium, but I don’t think that is the best option). Go to the Google Chrome web site to find it.
    I use Dropbox, and if you do, go to the Dropbox site and install the latest version.
    Skype is installed from the Skype site as well.
    I like GIMP image processing. That should be in your software installer center.
    I like VLC as a media player. This should be in your software installer center.

    ______________________
    Book suggestions:

    Ubuntu Unleashed 2017 Edition (Includes Content Update Program): Covering 16.10, 17.04, 17.10 (12th Edition)

    The Linux Command Line: A Complete Introduction

    ______________________

    Refinements

    The Unity Tweak tool lets you change how application windows are managed, including minimizing them. Play around with the tweak too.

    Go to the configuration panel and select the theme you like, or leave the theme along. I’m kind of beyond changing my theme all the time but it is fun if you are into it, go for it!

    Don’t bother

    Many will suggest system cleaning and monitoring tools. I don’t think most of these tools do much or provide much information beyond what you can get by using the command line tools that have always been there. Linux is not Windows. It takes care of itself and is not a crybaby. It is much more like a Mac in this way, and for good reasons: Both are Xnix operating systems, in the same family.

    Ubuntu 17.04 and the future

    A Zapus is a kind of jumping mouse. A Zesty Zapus is the new Ubuntu Linux operating system, 17.04.

    It has just been released and has some important features. But Zesty Zapus is not as interesting at the Artful Aardvark, which I’ll discuss briefly below.

    Support of 32 bit hardware is waning across the Linux world, and in this release the 32 pit PowerPC is not supported. The 64 bit PowerPC still is, but I would not be surprised if that support dropped in the not too distant future.

    There are various other changes deep under the hood that the average desktop user may not care about, including the use of systemd-resolved for the DNS resolver for networking.

    Of special interest is that Ubuntu is now not by default using a swap partition. Swap is a place in your hardware, normally on a drive, that the operating system uses as extra memory, so that when you don’t have enough physical memory, the swap can be used. There are two ways to make swap, one is by dedicating a hard drive or hard drive partition to it, the other is having the operating system use unused disk space on your computer for it. In the past it has been considered faster and more efficient to use a partition, but the non-partition option has always been in the background to use as needed and you didn’t have to have a swap partition. Now, Linux seems to be moving away from the partition and using the swap file instead, and Ubuntu will do this by default.

    Zesty Zapus uses Linux 4.10. It has “driverless printing” which is a new thing and works for some printers. There are updates to various software included with the distribution, including LibraOffice (now version 5.3, a fairly significant upgrade).

    Several if not all of the major “Ubuntu Flavors” are also updated, including the one I prefer, which is Mate (I’ll write about that elwsewhere).

    Otherwise, this new release of Ubuntu will act a lot like the previous release.

    But that will not be the case with the next release, 17.10, Artful Aardvark. As the alphabetical cycle of release names comes around full circle, so does the desktop paradigm. Ubuntu, controversially to some, not controversially to most, started out years ago using the Gnome desktop. Over time, Ubuntu created the “Unity Desktop” which was meant to unify the user experience across all devices including the as yet to exist and now never going to exist (I think) Ubuntu phone. In my view, Unity was a bad thing, I did not like the way it worked. On the other hand, the main Gnome people for reasons that are still mysterious to me, decided to copy Ubuntu and make Gnome look and act a lot like Unity.

    Now, Ubuntu will kill Unity. The next release of Ubuntu will not included Unity, and will instead use Gnome.

    So, to install Ubuntu 17.04, which you may not want to do (I’d wait until 17.10 if you want the Gnome interface) go HERE and follow the instructions. It is possible that you can upgrade your current installation to the new release, but if you have a non-Ubuntu OS or an older version, you may need to download an image and reinstall. Then, when you are done, you may want to do these things.

    ______________________
    Book suggestions:

    Ubuntu Unleashed 2017 Edition (Includes Content Update Program): Covering 16.10, 17.04, 17.10 (12th Edition)

    The Linux Command Line: A Complete Introduction

    ______________________

    The Birds Of India: New Guide

    A Photographic Field Guide to the Birds of India, Pakistan, Nepal, Bhutan, Sri Lanka, and Bangladesh is one of those next gen guides that uses photos but photos that are either enhanced or contextualized to serve the same role as drawings served in the old days, when drawings were better and photos were merely fun.

    From the editors:

    This is the only comprehensive photographic field guide to the birds of the entire Indian subcontinent. Every distinct species and subspecies–some 1,375 in all-

    -is covered with photographs, text, and maps. The guide features more than 4,000 stunning photographs, many never before published, which have been carefully selected to illustrate key identification features of each species. The up-to-date facing-page text includes concise descriptions of plumage, voice, range, habitat, and recent taxonomic changes. Each species has a detailed map reflecting the latest distribution information and containing notes on status and population density. The guide also features an introduction that provides an overview of birdlife and a brief history of ornithology in India and its neighbors. The result is an encyclopedic photographic guide that is essential for everyone birding anywhere in the subcontinent.

  • Covers all 1,375 subcontinental bird species
  • Features more than 4,000 stunning photographs to aid quick field identification
  • Includes up-to-date facing-page text and range maps
  • Contains concise descriptions of plumage, voice, habitat, and much more